Wall clock time and date at job start Mon Mar 30 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53094 * 109.47712 * 120.01946 * 2 1 3 5 5 C 1.53173 * 109.15998 * 177.59053 * 4 2 1 6 6 H 1.09005 * 109.54715 * 62.89016 * 5 4 2 7 7 C 1.53007 * 109.54407 * 183.15388 * 5 4 2 8 8 H 1.09001 * 109.47176 * 59.99661 * 7 5 4 9 9 O 1.42905 * 109.46854 * 299.99862 * 7 5 4 10 10 C 1.50693 * 109.47335 * 180.02562 * 7 5 4 11 11 H 1.08001 * 120.00202 * 359.97438 * 10 7 5 12 12 C 1.37875 * 120.00253 * 179.97438 * 10 7 5 13 13 N 1.31510 * 120.00346 * 179.97438 * 12 10 7 14 14 Si 1.86805 * 119.99901 * 0.02562 * 12 10 7 15 15 H 1.48497 * 109.47249 * 89.99379 * 14 12 10 16 16 H 1.48497 * 109.47205 * 209.99746 * 14 12 10 17 17 H 1.48503 * 109.46767 * 329.99685 * 14 12 10 18 18 C 1.53177 * 109.03954 * 303.01764 * 5 4 2 19 19 C 1.53095 * 109.16065 * 56.98292 * 18 5 4 20 20 O 1.42898 * 109.48249 * 239.97104 * 2 1 3 21 21 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 24 24 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 25 25 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 27 27 H 1.09001 * 109.52429 * 297.49386 * 4 2 1 28 28 H 1.08998 * 109.52439 * 57.68589 * 4 2 1 29 29 H 0.96689 * 114.00364 * 300.00202 * 9 7 5 30 30 H 0.97001 * 120.00360 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.52396 * 176.88606 * 18 5 4 32 32 H 1.09004 * 109.52256 * 297.01451 * 18 5 4 33 33 H 1.08998 * 109.48041 * 62.37029 * 19 18 5 34 34 H 1.09001 * 109.48148 * 182.40798 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7707 1.2123 6 1 3.9690 0.2437 1.2409 7 6 4.0877 -1.5592 2.4175 8 1 3.6916 -2.5741 2.3846 9 8 3.6616 -0.9204 3.6228 10 6 5.5934 -1.6055 2.3795 11 1 6.1285 -1.1214 1.5759 12 6 6.2881 -2.2659 3.3706 13 7 7.6022 -2.3067 3.3371 14 14 5.3627 -3.1038 4.7602 15 1 5.0626 -4.5074 4.3795 16 1 6.1971 -3.0917 5.9886 17 1 4.0927 -2.3783 5.0172 18 6 4.0176 -1.4602 -0.0806 19 6 3.4308 -0.7096 -1.2789 20 8 2.0067 -0.6742 -1.1663 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6770 1.9564 0.8899 25 1 3.1303 1.4422 -0.0005 26 1 1.6770 1.9563 -0.8901 27 1 1.7149 -0.1840 2.1399 28 1 1.6443 -1.7373 1.2713 29 1 3.9778 -0.0118 3.7194 30 1 8.0909 -2.7716 4.0342 31 1 5.1058 -1.4499 -0.1417 32 1 3.6622 -2.4906 -0.0854 33 1 3.8193 0.3087 -1.2957 34 1 3.7100 -1.2207 -2.2002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075576308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:12 Heat of formation + Delta-G solvation = -113.785319 kcal Electronic energy + Delta-G solvation = -15471.741981 eV Core-core repulsion = 12983.057630 eV Total energy + Delta-G solvation = -2488.684351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70269 -36.33090 -33.29985 -32.76262 -32.19100 -28.12862 -27.11757 -27.06606 -23.50859 -22.23241 -20.03220 -18.80513 -17.27486 -15.82925 -15.52540 -15.00940 -14.70046 -14.30469 -13.68834 -13.63043 -12.91624 -12.81183 -12.55810 -12.07874 -11.93241 -11.82862 -11.50571 -11.35877 -11.06784 -10.80153 -10.71845 -10.45082 -9.98301 -9.92245 -9.60148 -9.14500 -8.88339 -8.58645 -8.13641 -6.11584 -4.21587 3.39169 3.48602 3.74739 4.06809 4.54417 5.02792 5.09234 5.18754 5.26097 5.38283 5.58720 5.64887 5.73079 5.79197 5.85060 5.87297 5.91735 6.01669 6.08295 6.19675 6.30155 6.41597 6.46821 6.61948 6.70175 6.86896 6.91254 7.42345 7.61032 7.64768 8.30824 8.84254 9.03151 9.54105 10.98927 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045647 B = 0.009375 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.261114 B = 2986.097948 C = 3280.753739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.109 3.891 3 C -0.177 4.177 4 C -0.132 4.132 5 C -0.102 4.102 6 H 0.065 0.935 7 C 0.198 3.802 8 H 0.052 0.948 9 O -0.582 6.582 10 C -0.559 4.559 11 H 0.074 0.926 12 C 0.081 3.919 13 N -0.895 5.895 14 Si 0.869 3.131 15 H -0.288 1.288 16 H -0.297 1.297 17 H -0.218 1.218 18 C -0.139 4.139 19 C 0.058 3.942 20 O -0.382 6.382 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.354 0.646 30 H 0.264 0.736 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 5.251 -5.828 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.070 3.930 3 C -0.234 4.234 4 C -0.170 4.170 5 C -0.121 4.121 6 H 0.083 0.917 7 C 0.141 3.859 8 H 0.070 0.930 9 O -0.388 6.388 10 C -0.596 4.596 11 H 0.092 0.908 12 C -0.123 4.123 13 N -0.532 5.532 14 Si 0.696 3.304 15 H -0.215 1.215 16 H -0.223 1.223 17 H -0.140 1.140 18 C -0.177 4.177 19 C -0.018 4.018 20 O -0.302 6.302 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.200 0.800 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.306 4.537 -5.788 13.488 hybrid contribution 0.413 0.054 0.749 0.857 sum -10.893 4.591 -5.039 12.850 Atomic orbital electron populations 1.21737 0.93217 1.02462 1.01820 1.21495 0.94047 0.91178 0.86296 1.22427 1.02463 0.96623 1.01919 1.22192 0.97230 1.00801 0.96789 1.21747 0.93196 1.00205 0.96902 0.91700 1.19802 0.94126 0.91746 0.80261 0.93007 1.86665 1.78146 1.30255 1.43711 1.21562 0.90026 1.36490 1.11507 0.90835 1.25020 0.94601 0.94718 0.97928 1.69957 1.06662 1.42279 1.34322 0.87057 0.82809 0.79379 0.81176 1.21505 1.22340 1.14036 1.22085 1.02193 0.99593 0.93807 1.22644 0.80836 0.99524 0.98823 1.87869 1.21492 1.77608 1.43209 0.92402 0.92081 0.91401 0.91768 0.91546 0.92576 0.91009 0.91868 0.79961 0.92681 0.89710 0.91819 0.93458 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.85 37.16 0.33 -1.35 16 2 C 0.11 1.61 1.11 -90.57 -0.10 1.51 16 3 C -0.18 -2.36 7.93 37.16 0.29 -2.06 16 4 C -0.13 -2.22 4.01 -26.59 -0.11 -2.32 16 5 C -0.10 -1.93 1.69 -90.44 -0.15 -2.09 16 6 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 7 C 0.20 4.54 1.90 -27.88 -0.05 4.49 16 8 H 0.05 1.26 7.57 -51.93 -0.39 0.87 16 9 O -0.58 -12.98 9.54 -35.23 -0.34 -13.32 16 10 C -0.56 -15.14 8.65 -34.44 -0.30 -15.44 16 11 H 0.07 2.13 7.00 -52.49 -0.37 1.77 16 12 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 13 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 14 Si 0.87 21.90 26.99 -169.99 -4.59 17.32 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 17 H -0.22 -5.37 5.31 56.52 0.30 -5.07 16 18 C -0.14 -2.55 5.11 -26.59 -0.14 -2.68 16 19 C 0.06 0.91 6.52 37.21 0.24 1.15 16 20 O -0.38 -6.26 10.24 -35.23 -0.36 -6.62 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.94 4.98 -51.93 -0.26 0.68 16 26 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 27 H 0.07 1.17 7.79 -51.93 -0.40 0.77 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.35 6.99 9.04 45.56 0.41 7.40 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.08 1.68 6.77 -51.93 -0.35 1.33 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 261.04 15.07 3.93 3.93 Total: -1.00 -30.40 261.04 -5.31 -35.71 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -4.65 Total: 5.96 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: -0.08 Total: -16.57 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.77 Total: -26.42 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.70 Total: -19.94 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.59 Total: 17.32 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.40 -5.31 -35.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.079 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds