Wall clock time and date at job start Mon Mar 30 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53094 * 109.47712 * 120.01946 * 2 1 3 5 5 C 1.53173 * 109.15998 * 177.59053 * 4 2 1 6 6 H 1.09005 * 109.54715 * 62.89016 * 5 4 2 7 7 C 1.53007 * 109.54407 * 183.15388 * 5 4 2 8 8 H 1.09001 * 109.47176 * 59.99661 * 7 5 4 9 9 O 1.42905 * 109.46854 * 299.99862 * 7 5 4 10 10 C 1.50693 * 109.47335 * 180.02562 * 7 5 4 11 11 H 1.08001 * 120.00202 * 359.97438 * 10 7 5 12 12 C 1.37875 * 120.00253 * 179.97438 * 10 7 5 13 13 N 1.31510 * 120.00346 * 179.97438 * 12 10 7 14 14 Si 1.86805 * 119.99901 * 0.02562 * 12 10 7 15 15 H 1.48497 * 109.47249 * 89.99379 * 14 12 10 16 16 H 1.48497 * 109.47205 * 209.99746 * 14 12 10 17 17 H 1.48503 * 109.46767 * 329.99685 * 14 12 10 18 18 C 1.53177 * 109.03954 * 303.01764 * 5 4 2 19 19 C 1.53095 * 109.16065 * 56.98292 * 18 5 4 20 20 O 1.42898 * 109.48249 * 239.97104 * 2 1 3 21 21 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 24 24 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 25 25 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 27 27 H 1.09001 * 109.52429 * 297.49386 * 4 2 1 28 28 H 1.08998 * 109.52439 * 57.68589 * 4 2 1 29 29 H 0.96689 * 114.00364 * 300.00202 * 9 7 5 30 30 H 0.97001 * 120.00360 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.52396 * 176.88606 * 18 5 4 32 32 H 1.09004 * 109.52256 * 297.01451 * 18 5 4 33 33 H 1.08998 * 109.48041 * 62.37029 * 19 18 5 34 34 H 1.09001 * 109.48148 * 182.40798 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7221 1.2497 5 6 3.5710 -0.7707 1.2123 6 1 3.9690 0.2437 1.2409 7 6 4.0877 -1.5592 2.4175 8 1 3.6916 -2.5741 2.3846 9 8 3.6616 -0.9204 3.6228 10 6 5.5934 -1.6055 2.3795 11 1 6.1285 -1.1214 1.5759 12 6 6.2881 -2.2659 3.3706 13 7 7.6022 -2.3067 3.3371 14 14 5.3627 -3.1038 4.7602 15 1 5.0626 -4.5074 4.3795 16 1 6.1971 -3.0917 5.9886 17 1 4.0927 -2.3783 5.0172 18 6 4.0176 -1.4602 -0.0806 19 6 3.4308 -0.7096 -1.2789 20 8 2.0067 -0.6742 -1.1663 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6770 1.9564 0.8899 25 1 3.1303 1.4422 -0.0005 26 1 1.6770 1.9563 -0.8901 27 1 1.7149 -0.1840 2.1399 28 1 1.6443 -1.7373 1.2713 29 1 3.9778 -0.0118 3.7194 30 1 8.0909 -2.7716 4.0342 31 1 5.1058 -1.4499 -0.1417 32 1 3.6622 -2.4906 -0.0854 33 1 3.8193 0.3087 -1.2957 34 1 3.7100 -1.2207 -2.2002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075576308.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:12 Heat of formation + Delta-G solvation = -135.601979 kcal Electronic energy + Delta-G solvation = -15472.688023 eV Core-core repulsion = 12983.057630 eV Total energy + Delta-G solvation = -2489.630393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.01869 -38.06649 -34.55784 -34.39198 -34.20038 -29.65151 -28.74673 -28.14841 -25.15668 -23.73292 -21.63459 -20.14995 -19.28587 -17.11513 -16.94200 -16.79211 -16.44481 -15.79023 -15.18636 -15.10318 -14.79705 -14.25844 -13.85135 -13.64982 -13.25898 -13.01546 -12.92664 -12.84654 -12.57204 -12.37308 -12.32459 -11.96811 -11.68369 -11.54308 -10.97822 -10.92437 -10.74430 -10.48282 -9.87817 -8.33594 -6.45826 1.37523 1.43152 1.72447 2.43226 2.90039 3.03800 3.76034 3.90608 3.94839 4.07470 4.12911 4.24654 4.45373 4.54523 4.62753 4.68495 4.79841 4.84532 4.92147 4.94980 5.03843 5.11148 5.19476 5.25462 5.32286 5.35855 5.46614 5.59336 5.69387 6.13583 6.41354 6.66329 7.19966 7.36803 8.80273 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045647 B = 0.009375 C = 0.008533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.261114 B = 2986.097948 C = 3280.753739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.104 3.896 3 C -0.174 4.174 4 C -0.126 4.126 5 C -0.096 4.096 6 H 0.066 0.934 7 C 0.204 3.796 8 H 0.041 0.959 9 O -0.583 6.583 10 C -0.552 4.552 11 H 0.043 0.957 12 C 0.025 3.975 13 N -0.941 5.941 14 Si 0.932 3.068 15 H -0.290 1.290 16 H -0.298 1.298 17 H -0.205 1.205 18 C -0.138 4.138 19 C 0.065 3.935 20 O -0.391 6.391 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.368 0.632 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 6.080 -5.869 15.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 C -0.231 4.231 4 C -0.163 4.163 5 C -0.114 4.114 6 H 0.084 0.916 7 C 0.146 3.854 8 H 0.058 0.942 9 O -0.390 6.390 10 C -0.590 4.590 11 H 0.061 0.939 12 C -0.174 4.174 13 N -0.581 5.581 14 Si 0.757 3.243 15 H -0.216 1.216 16 H -0.225 1.225 17 H -0.127 1.127 18 C -0.176 4.176 19 C -0.012 4.012 20 O -0.311 6.311 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.216 0.784 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.528 5.382 -5.836 15.685 hybrid contribution 1.130 -0.168 0.720 1.350 sum -12.398 5.214 -5.116 14.390 Atomic orbital electron populations 1.21750 0.91119 1.02740 1.03342 1.21682 0.95644 0.91537 0.84637 1.22401 1.01610 0.95762 1.03368 1.22133 0.94914 1.00774 0.98515 1.21609 0.95151 0.99428 0.95258 0.91575 1.19628 0.91293 0.92206 0.82259 0.94150 1.86583 1.77826 1.31353 1.43257 1.21876 0.92366 1.34848 1.09920 0.93867 1.25841 0.95203 0.95751 1.00583 1.70080 1.08275 1.44152 1.35585 0.86095 0.81870 0.78216 0.78147 1.21637 1.22537 1.12658 1.22033 1.00805 0.99554 0.95204 1.22605 0.80714 0.99828 0.98012 1.87876 1.21402 1.78015 1.43817 0.91196 0.92476 0.89608 0.90324 0.92824 0.91201 0.90199 0.92902 0.78421 0.92665 0.92111 0.92851 0.92427 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.85 71.98 0.64 -2.20 16 2 C 0.10 2.78 1.11 -10.76 -0.01 2.77 16 3 C -0.17 -4.09 7.93 71.98 0.57 -3.52 16 4 C -0.13 -3.94 4.01 30.68 0.12 -3.82 16 5 C -0.10 -3.55 1.69 -10.67 -0.02 -3.57 16 6 H 0.07 2.44 6.62 -2.38 -0.02 2.42 16 7 C 0.20 9.21 1.90 29.85 0.06 9.27 16 8 H 0.04 1.94 7.57 -2.39 -0.02 1.92 16 9 O -0.58 -24.82 9.54 -148.98 -1.42 -26.25 16 10 C -0.55 -30.35 8.65 25.60 0.22 -30.13 16 11 H 0.04 2.59 7.00 -2.91 -0.02 2.57 16 12 C 0.03 1.46 5.47 84.65 0.46 1.93 16 13 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 14 Si 0.93 45.40 26.99 68.60 1.85 47.25 16 15 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 16 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 17 H -0.20 -9.46 5.31 99.48 0.53 -8.93 16 18 C -0.14 -5.04 5.11 30.69 0.16 -4.88 16 19 C 0.06 1.92 6.52 72.01 0.47 2.39 16 20 O -0.39 -11.90 10.24 -148.98 -1.52 -13.42 16 21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.39 4.98 -2.39 -0.01 1.38 16 26 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.08 2.37 7.79 -2.39 -0.02 2.36 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.37 13.73 9.04 -74.06 -0.67 13.06 16 30 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.06 2.48 6.77 -2.39 -0.02 2.47 16 32 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 1.60 6.34 -2.39 -0.02 1.59 16 34 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 Total: -1.00 -64.50 261.04 2.10 -62.40 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.23 Total: 19.92 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: 2.67 Total: -31.76 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -2.95 Total: -39.67 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.85 Total: 47.25 kcal Total: -64.50 2.10 -62.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576308.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.204 kcal (2) G-P(sol) polarization free energy of solvation -64.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds