Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.48455 * 2 1 4 4 C 1.53092 * 109.47928 * 239.96495 * 2 1 3 5 5 C 1.53182 * 109.16368 * 182.40729 * 4 2 1 6 6 H 1.09004 * 109.61806 * 297.06996 * 5 4 2 7 7 C 1.53001 * 109.54549 * 176.84894 * 5 4 2 8 8 H 1.09003 * 109.46836 * 300.45025 * 7 5 4 9 9 O 1.42900 * 109.46902 * 60.44489 * 7 5 4 10 10 C 1.50694 * 109.47168 * 180.44568 * 7 5 4 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 7 5 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 7 5 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.53177 * 109.03375 * 56.98343 * 5 4 2 19 19 C 1.53090 * 109.16437 * 303.02012 * 18 5 4 20 20 O 1.42896 * 109.41692 * 57.60869 * 19 18 5 21 21 H 1.08994 * 109.46733 * 299.97555 * 1 2 3 22 22 H 1.08998 * 109.46616 * 59.97460 * 1 2 3 23 23 H 1.08998 * 109.46712 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47604 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46860 * 300.02741 * 3 2 1 26 26 H 1.09000 * 109.46561 * 60.02591 * 3 2 1 27 27 H 1.09001 * 109.52020 * 62.50699 * 4 2 1 28 28 H 1.08994 * 109.52560 * 302.31772 * 4 2 1 29 29 H 0.96702 * 114.00584 * 60.00232 * 9 7 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 31 31 H 1.08995 * 109.52251 * 62.92962 * 18 5 4 32 32 H 1.09004 * 109.51811 * 183.11341 * 18 5 4 33 33 H 1.08998 * 109.47938 * 177.59808 * 19 18 5 34 34 H 1.08999 * 109.47634 * 297.62644 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2121 6 1 3.9703 0.2429 -1.2416 7 6 4.0878 -1.5597 -2.4171 8 1 3.6853 -2.5723 -2.3882 9 8 3.6703 -0.9155 -3.6225 10 6 5.5930 -1.6158 -2.3728 11 1 6.1278 -1.1372 -1.5658 12 6 6.2876 -2.2782 -3.3628 13 7 5.6364 -2.8614 -4.3453 14 14 8.1535 -2.3471 -3.3082 15 1 8.6550 -3.1127 -4.4777 16 1 8.7012 -0.9674 -3.3475 17 1 8.5877 -3.0166 -2.0559 18 6 4.0176 -1.4601 0.0810 19 6 3.4307 -0.7093 1.2791 20 8 2.0066 -0.6742 1.1665 21 1 -0.3632 0.5134 0.8902 22 1 -0.3632 0.5142 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1303 1.4422 -0.0005 25 1 1.6767 1.9564 -0.8898 26 1 1.6775 1.9561 0.8902 27 1 1.7148 -0.1845 -2.1398 28 1 1.6442 -1.7375 -1.2708 29 1 3.9925 -0.0085 -3.7157 30 1 6.1251 -3.3271 -5.0419 31 1 3.6614 -2.4902 0.0865 32 1 5.1059 -1.4498 0.1421 33 1 3.7101 -1.2202 2.2005 34 1 3.8193 0.3089 1.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075576309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -119.021962 kcal Electronic energy + Delta-G solvation = -15415.447304 eV Core-core repulsion = 12926.535874 eV Total energy + Delta-G solvation = -2488.911429 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60595 -35.97085 -33.23542 -32.52575 -32.09013 -27.97398 -27.05243 -26.70669 -23.51383 -22.24325 -20.03788 -18.69395 -16.95232 -15.73595 -15.48751 -14.77749 -14.57218 -14.26288 -13.79452 -13.34717 -12.77669 -12.68387 -12.41229 -11.96799 -11.81966 -11.59845 -11.43145 -11.13501 -10.91263 -10.80230 -10.66981 -10.47656 -10.18593 -9.87167 -9.51647 -9.25024 -8.74892 -8.54450 -7.97141 -5.98490 -4.15980 3.28487 3.34273 3.35531 4.12544 4.39379 5.12113 5.16315 5.26058 5.34846 5.44192 5.66173 5.72726 5.79971 5.87175 5.94846 5.95403 5.98879 6.13772 6.22813 6.36151 6.41611 6.50348 6.59121 6.74239 6.90777 6.99962 7.01360 7.68316 7.77221 7.89134 8.22368 8.86351 9.40306 9.60786 11.05667 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.008689 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.207805 B = 3221.522446 C = 3524.315197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.108 3.892 3 C -0.176 4.176 4 C -0.130 4.130 5 C -0.111 4.111 6 H 0.059 0.941 7 C 0.235 3.765 8 H 0.053 0.947 9 O -0.566 6.566 10 C -0.568 4.568 11 H 0.056 0.944 12 C 0.078 3.922 13 N -0.861 5.861 14 Si 0.886 3.114 15 H -0.287 1.287 16 H -0.277 1.277 17 H -0.277 1.277 18 C -0.137 4.137 19 C 0.058 3.942 20 O -0.382 6.382 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.343 0.657 30 H 0.260 0.740 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 6.170 8.061 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.069 3.931 3 C -0.233 4.233 4 C -0.167 4.167 5 C -0.130 4.130 6 H 0.077 0.923 7 C 0.178 3.822 8 H 0.071 0.929 9 O -0.368 6.368 10 C -0.606 4.606 11 H 0.074 0.926 12 C -0.128 4.128 13 N -0.497 5.497 14 Si 0.714 3.286 15 H -0.212 1.212 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.175 4.175 19 C -0.019 4.019 20 O -0.302 6.302 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.186 0.814 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.294 5.381 7.926 11.463 hybrid contribution 1.683 0.502 -0.079 1.758 sum -4.611 5.883 7.848 10.838 Atomic orbital electron populations 1.21734 0.93260 1.02480 1.01746 1.21521 0.94021 0.91129 0.86408 1.22418 1.02373 0.96714 1.01830 1.22157 0.97351 1.00741 0.96491 1.21961 0.93299 1.00099 0.97667 0.92306 1.19377 0.92750 0.91253 0.78839 0.92896 1.86559 1.76661 1.29348 1.44247 1.21659 0.92368 1.36552 1.09984 0.92605 1.25063 0.98047 0.94481 0.95222 1.70069 1.35227 1.33069 1.11324 0.86781 0.86142 0.78171 0.77524 1.21245 1.20231 1.20207 1.22064 1.01659 0.99770 0.93999 1.22638 0.81028 0.99384 0.98800 1.87863 1.21376 1.77662 1.43297 0.92505 0.91379 0.92054 0.91643 0.91773 0.92687 0.91079 0.91862 0.81377 0.93011 0.91777 0.90229 0.89848 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.85 37.16 0.33 -1.45 16 2 C 0.11 1.68 1.11 -90.57 -0.10 1.58 16 3 C -0.18 -2.45 7.94 37.16 0.29 -2.15 16 4 C -0.13 -2.34 4.02 -26.59 -0.11 -2.44 16 5 C -0.11 -2.23 1.69 -90.43 -0.15 -2.38 16 6 H 0.06 1.16 6.63 -51.93 -0.34 0.82 16 7 C 0.24 5.88 2.41 -27.89 -0.07 5.81 16 8 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 9 O -0.57 -14.46 12.14 -35.23 -0.43 -14.89 16 10 C -0.57 -15.29 8.07 -34.44 -0.28 -15.56 16 11 H 0.06 1.46 6.72 -52.49 -0.35 1.10 16 12 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 13 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 14 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.14 -2.57 5.10 -26.59 -0.14 -2.70 16 19 C 0.06 0.92 6.52 37.20 0.24 1.17 16 20 O -0.38 -6.48 10.24 -35.23 -0.36 -6.84 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.96 4.98 -51.93 -0.26 0.70 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.27 7.80 -51.93 -0.41 0.87 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.34 7.77 9.04 45.56 0.41 8.18 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 LS Contribution 267.02 15.07 4.02 4.02 Total: -1.00 -30.03 267.02 -5.71 -35.74 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -4.57 Total: 6.76 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -0.07 Total: -16.06 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.71 Total: -24.84 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.79 Total: -21.73 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.03 -5.71 -35.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.279 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds