Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.48455 * 2 1 4 4 C 1.53092 * 109.47928 * 239.96495 * 2 1 3 5 5 C 1.53182 * 109.16368 * 182.40729 * 4 2 1 6 6 H 1.09004 * 109.61806 * 297.06996 * 5 4 2 7 7 C 1.53001 * 109.54549 * 176.84894 * 5 4 2 8 8 H 1.09003 * 109.46836 * 300.45025 * 7 5 4 9 9 O 1.42900 * 109.46902 * 60.44489 * 7 5 4 10 10 C 1.50694 * 109.47168 * 180.44568 * 7 5 4 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 7 5 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 7 5 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 7 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.53177 * 109.03375 * 56.98343 * 5 4 2 19 19 C 1.53090 * 109.16437 * 303.02012 * 18 5 4 20 20 O 1.42896 * 109.41692 * 57.60869 * 19 18 5 21 21 H 1.08994 * 109.46733 * 299.97555 * 1 2 3 22 22 H 1.08998 * 109.46616 * 59.97460 * 1 2 3 23 23 H 1.08998 * 109.46712 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47604 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46860 * 300.02741 * 3 2 1 26 26 H 1.09000 * 109.46561 * 60.02591 * 3 2 1 27 27 H 1.09001 * 109.52020 * 62.50699 * 4 2 1 28 28 H 1.08994 * 109.52560 * 302.31772 * 4 2 1 29 29 H 0.96702 * 114.00584 * 60.00232 * 9 7 5 30 30 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 31 31 H 1.08995 * 109.52251 * 62.92962 * 18 5 4 32 32 H 1.09004 * 109.51811 * 183.11341 * 18 5 4 33 33 H 1.08998 * 109.47938 * 177.59808 * 19 18 5 34 34 H 1.08999 * 109.47634 * 297.62644 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2495 5 6 3.5711 -0.7710 -1.2121 6 1 3.9703 0.2429 -1.2416 7 6 4.0878 -1.5597 -2.4171 8 1 3.6853 -2.5723 -2.3882 9 8 3.6703 -0.9155 -3.6225 10 6 5.5930 -1.6158 -2.3728 11 1 6.1278 -1.1372 -1.5658 12 6 6.2876 -2.2782 -3.3628 13 7 5.6364 -2.8614 -4.3453 14 14 8.1535 -2.3471 -3.3082 15 1 8.6550 -3.1127 -4.4777 16 1 8.7012 -0.9674 -3.3475 17 1 8.5877 -3.0166 -2.0559 18 6 4.0176 -1.4601 0.0810 19 6 3.4307 -0.7093 1.2791 20 8 2.0066 -0.6742 1.1665 21 1 -0.3632 0.5134 0.8902 22 1 -0.3632 0.5142 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1303 1.4422 -0.0005 25 1 1.6767 1.9564 -0.8898 26 1 1.6775 1.9561 0.8902 27 1 1.7148 -0.1845 -2.1398 28 1 1.6442 -1.7375 -1.2708 29 1 3.9925 -0.0085 -3.7157 30 1 6.1251 -3.3271 -5.0419 31 1 3.6614 -2.4902 0.0865 32 1 5.1059 -1.4498 0.1421 33 1 3.7101 -1.2202 2.2005 34 1 3.8193 0.3089 1.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075576309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -140.280813 kcal Electronic energy + Delta-G solvation = -15416.369157 eV Core-core repulsion = 12926.535874 eV Total energy + Delta-G solvation = -2489.833282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98139 -37.83880 -34.52496 -34.22078 -34.14730 -29.44955 -28.53968 -28.15182 -25.27117 -23.77760 -21.67835 -20.09631 -18.99422 -17.07423 -16.90251 -16.65251 -16.41561 -15.77631 -15.29226 -14.95529 -14.43568 -14.20652 -13.79985 -13.42382 -13.09943 -13.01163 -12.90360 -12.78284 -12.61845 -12.45574 -12.12153 -12.04359 -11.95325 -11.49879 -11.01681 -10.86723 -10.66625 -10.47836 -9.82483 -8.11454 -6.36020 1.39823 1.41178 1.49085 2.39134 2.90969 3.13779 3.83174 3.95383 3.95708 4.10004 4.21989 4.32003 4.51381 4.57609 4.66553 4.70875 4.82552 4.84106 4.92529 4.96133 5.08063 5.12186 5.22160 5.30590 5.36804 5.40061 5.48698 5.68317 5.85787 6.12996 6.42191 6.75590 7.35343 7.56839 8.92850 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047190 B = 0.008689 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.207805 B = 3221.522446 C = 3524.315197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.106 3.894 3 C -0.172 4.172 4 C -0.125 4.125 5 C -0.100 4.100 6 H 0.067 0.933 7 C 0.234 3.766 8 H 0.009 0.991 9 O -0.582 6.582 10 C -0.575 4.575 11 H 0.064 0.936 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.956 3.044 15 H -0.288 1.288 16 H -0.266 1.266 17 H -0.269 1.269 18 C -0.136 4.136 19 C 0.064 3.936 20 O -0.392 6.392 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.356 0.644 30 H 0.259 0.741 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 7.772 9.466 13.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.067 3.933 3 C -0.229 4.229 4 C -0.163 4.163 5 C -0.119 4.119 6 H 0.086 0.914 7 C 0.177 3.823 8 H 0.027 0.973 9 O -0.386 6.386 10 C -0.612 4.612 11 H 0.082 0.918 12 C -0.181 4.181 13 N -0.542 5.542 14 Si 0.781 3.219 15 H -0.213 1.213 16 H -0.191 1.191 17 H -0.194 1.194 18 C -0.174 4.174 19 C -0.013 4.013 20 O -0.312 6.312 21 H 0.092 0.908 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.200 0.800 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.005 6.999 9.350 13.133 hybrid contribution 1.553 -0.014 -0.542 1.645 sum -4.452 6.985 8.808 12.091 Atomic orbital electron populations 1.21752 0.91338 1.02590 1.03346 1.21648 0.95538 0.91668 0.84442 1.22383 1.01792 0.95434 1.03338 1.22098 0.95749 1.00050 0.98354 1.21740 0.94724 0.99520 0.95929 0.91420 1.19253 0.92104 0.90209 0.80726 0.97327 1.86492 1.76796 1.30344 1.44938 1.22045 0.93486 1.35872 1.09832 0.91783 1.25944 1.03068 0.94157 0.94902 1.70224 1.37200 1.34453 1.12338 0.85664 0.80094 0.78566 0.77569 1.21333 1.19076 1.19358 1.22028 1.01254 0.99143 0.94926 1.22659 0.80593 1.00024 0.97993 1.87869 1.21715 1.78065 1.43577 0.90836 0.89852 0.92773 0.92475 0.90627 0.90885 0.91141 0.94009 0.79971 0.93184 0.93681 0.91046 0.87682 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.85 71.98 0.64 -2.55 16 2 C 0.11 3.08 1.11 -10.76 -0.01 3.07 16 3 C -0.17 -4.24 7.94 71.98 0.57 -3.67 16 4 C -0.12 -4.46 4.02 30.69 0.12 -4.33 16 5 C -0.10 -4.00 1.69 -10.67 -0.02 -4.02 16 6 H 0.07 2.59 6.63 -2.39 -0.02 2.57 16 7 C 0.23 12.03 2.41 29.85 0.07 12.10 16 8 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 9 O -0.58 -30.32 12.14 -148.98 -1.81 -32.13 16 10 C -0.57 -31.15 8.07 25.60 0.21 -30.94 16 11 H 0.06 3.30 6.72 -2.91 -0.02 3.28 16 12 C 0.02 1.18 5.40 84.66 0.46 1.63 16 13 N -0.90 -54.88 12.84 21.45 0.28 -54.60 16 14 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 18 C -0.14 -5.03 5.10 30.68 0.16 -4.87 16 19 C 0.06 1.88 6.52 72.01 0.47 2.35 16 20 O -0.39 -12.44 10.24 -148.98 -1.52 -13.96 16 21 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.06 1.50 4.98 -2.39 -0.01 1.49 16 25 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 27 H 0.07 2.49 7.80 -2.39 -0.02 2.47 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.36 16.19 9.04 -74.06 -0.67 15.52 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.04 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.73 6.74 -2.39 -0.02 2.71 16 33 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.06 1.66 6.34 -2.39 -0.02 1.65 16 Total: -1.00 -64.51 267.02 2.04 -62.47 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.41 Total: 24.06 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 2.66 Total: -31.23 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.28 Total: -54.60 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -3.33 Total: -46.09 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.51 2.04 -62.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.807 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds