Wall clock time and date at job start Mon Mar 30 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53091 * 109.47888 * 239.97167 * 2 1 3 5 5 C 1.53203 * 109.15220 * 297.61724 * 4 2 1 6 6 H 1.08993 * 109.61070 * 62.93736 * 5 4 2 7 7 C 1.53000 * 109.53864 * 183.16147 * 5 4 2 8 8 H 1.09003 * 109.46679 * 304.55974 * 7 5 4 9 9 O 1.42900 * 109.47328 * 64.55941 * 7 5 4 10 10 C 1.50697 * 109.46977 * 184.56410 * 7 5 4 11 11 H 1.08006 * 120.00150 * 359.97438 * 10 7 5 12 12 C 1.37877 * 120.00249 * 179.97438 * 10 7 5 13 13 N 1.31519 * 119.99580 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 120.00329 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47129 * 59.99905 * 14 12 10 16 16 H 1.48495 * 109.47378 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47322 * 299.99892 * 14 12 10 18 18 C 1.53173 * 109.03907 * 303.02878 * 5 4 2 19 19 C 1.53086 * 109.17027 * 56.98184 * 18 5 4 20 20 O 1.42903 * 109.47659 * 120.02008 * 2 1 3 21 21 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 24 24 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 25 25 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 27 27 H 1.08997 * 109.52280 * 57.53794 * 4 2 1 28 28 H 1.09007 * 109.51882 * 177.72075 * 4 2 1 29 29 H 0.96700 * 113.99893 * 59.99987 * 9 7 5 30 30 H 0.96996 * 119.99761 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.52794 * 297.07298 * 18 5 4 32 32 H 1.09004 * 109.52237 * 176.88955 * 18 5 4 33 33 H 1.08997 * 109.48854 * 182.40459 * 19 18 5 34 34 H 1.09006 * 109.48000 * 62.36490 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 1.5757 -2.1816 -1.2118 6 1 0.4868 -2.2195 -1.2411 7 6 2.1468 -2.9319 -2.4167 8 1 1.8628 -2.4159 -3.3339 9 8 3.5716 -2.9779 -2.3176 10 6 1.5992 -4.3357 -2.4399 11 1 0.9128 -4.6604 -1.6718 12 6 1.9744 -5.2056 -3.4416 13 7 2.8098 -4.8100 -4.3772 14 14 1.2962 -6.9458 -3.4700 15 1 -0.1845 -6.8984 -3.5720 16 1 1.8503 -7.6741 -4.6395 17 1 1.6841 -7.6487 -2.2206 18 6 2.0764 -2.8322 0.0814 19 6 1.5645 -2.0283 1.2794 20 8 2.0065 -0.6740 1.1665 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6770 1.9564 0.8899 25 1 3.1303 1.4422 -0.0005 26 1 1.6770 1.9563 -0.8901 27 1 1.6422 -0.2357 -2.1398 28 1 3.1299 -0.6874 -1.2709 29 1 3.8964 -3.4240 -1.5236 30 1 3.0734 -5.4219 -5.0822 31 1 3.1664 -2.8400 0.0870 32 1 1.7036 -3.8546 0.1427 33 1 1.9529 -2.4619 2.2009 34 1 0.4749 -2.0547 1.2961 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075576310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:16 Heat of formation + Delta-G solvation = -117.865251 kcal Electronic energy + Delta-G solvation = -15464.895170 eV Core-core repulsion = 12976.033900 eV Total energy + Delta-G solvation = -2488.861271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.64374 -36.07313 -33.26261 -32.26794 -32.00544 -28.12772 -27.10195 -26.67009 -23.49933 -22.54818 -19.90575 -18.52153 -16.92780 -15.72999 -15.48988 -14.76299 -14.58353 -14.26104 -13.82810 -13.65731 -12.78296 -12.64328 -12.31737 -11.96526 -11.85433 -11.58685 -11.42520 -11.06576 -10.91283 -10.78553 -10.68148 -10.45456 -10.14352 -9.94434 -9.53658 -9.21722 -8.75484 -8.52791 -7.96812 -5.98251 -4.15812 3.28593 3.34408 3.35659 4.11732 4.39598 5.12722 5.16110 5.28227 5.34529 5.42631 5.63333 5.72550 5.79640 5.86982 5.94705 5.95935 5.98505 6.11181 6.23742 6.31310 6.39659 6.48439 6.58467 6.69019 6.87463 6.94096 7.16456 7.67548 7.75481 7.87312 8.22636 8.86504 9.41906 9.61329 11.05908 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048668 B = 0.008541 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.183580 B = 3277.345540 C = 3455.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 C -0.135 4.135 4 C -0.132 4.132 5 C -0.113 4.113 6 H 0.063 0.937 7 C 0.235 3.765 8 H 0.053 0.947 9 O -0.565 6.565 10 C -0.568 4.568 11 H 0.055 0.945 12 C 0.078 3.922 13 N -0.861 5.861 14 Si 0.887 3.113 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.142 4.142 19 C 0.059 3.941 20 O -0.381 6.381 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.343 0.657 30 H 0.260 0.740 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 7.402 8.503 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.070 3.930 3 C -0.192 4.192 4 C -0.169 4.169 5 C -0.131 4.131 6 H 0.082 0.918 7 C 0.178 3.822 8 H 0.071 0.929 9 O -0.369 6.369 10 C -0.606 4.606 11 H 0.073 0.927 12 C -0.128 4.128 13 N -0.497 5.497 14 Si 0.714 3.286 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.180 4.180 19 C -0.017 4.017 20 O -0.301 6.301 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.188 0.812 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.022 7.780 7.882 11.480 hybrid contribution -0.639 -1.559 0.207 1.698 sum -3.661 6.220 8.089 10.841 Atomic orbital electron populations 1.22431 0.96408 1.02776 1.01827 1.21511 0.92671 0.92406 0.86421 1.21736 1.01849 0.93931 1.01712 1.22188 1.02038 0.96582 0.96128 1.21949 0.99981 0.93620 0.97588 0.91830 1.19333 0.78416 0.93397 0.91081 0.92893 1.86547 1.23855 1.80118 1.46332 1.21650 1.29298 0.98116 1.11534 0.92679 1.25059 0.94274 0.98356 0.95126 1.70068 1.31461 1.35383 1.12779 0.86777 0.79323 0.84935 0.77556 1.20247 1.21247 1.20209 1.22112 1.01488 0.99971 0.94418 1.22610 0.98229 0.82227 0.98677 1.87866 1.74055 1.24920 1.43239 0.91807 0.91596 0.92668 0.92505 0.91991 0.91440 0.91922 0.90898 0.81247 0.93011 0.91575 0.90409 0.89872 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 7.94 37.16 0.29 -2.18 16 2 C 0.11 1.69 1.11 -90.57 -0.10 1.59 16 3 C -0.14 -1.78 8.85 37.16 0.33 -1.45 16 4 C -0.13 -2.37 4.13 -26.58 -0.11 -2.48 16 5 C -0.11 -2.25 1.75 -90.43 -0.16 -2.41 16 6 H 0.06 1.28 6.62 -51.93 -0.34 0.93 16 7 C 0.24 5.89 2.59 -27.88 -0.07 5.82 16 8 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 9 O -0.57 -14.58 12.11 -35.23 -0.43 -15.01 16 10 C -0.57 -15.34 8.10 -34.44 -0.28 -15.62 16 11 H 0.06 1.44 7.06 -52.48 -0.37 1.07 16 12 C 0.08 2.17 5.40 -17.82 -0.10 2.07 16 13 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 14 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.14 -2.59 4.84 -26.60 -0.13 -2.72 16 19 C 0.06 0.93 6.52 37.20 0.24 1.17 16 20 O -0.38 -6.40 10.24 -35.23 -0.36 -6.76 16 21 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.07 0.97 4.98 -51.93 -0.26 0.71 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.07 1.41 7.74 -51.93 -0.40 1.01 16 29 H 0.34 8.02 7.12 45.56 0.32 8.34 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 1.23 6.56 -51.93 -0.34 0.89 16 32 H 0.08 1.47 7.06 -51.93 -0.37 1.10 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 LS Contribution 264.20 15.07 3.98 3.98 Total: -1.00 -29.95 264.20 -5.80 -35.75 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.60 Total: 6.96 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: -0.08 Total: -16.20 kcal Atomic # 7 Polarization: -25.55 SS G_CDS: 0.71 Total: -24.84 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: -0.79 Total: -21.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.95 -5.80 -35.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.116 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds