Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47929 * 2 1 4 4 C 1.53091 * 109.47888 * 239.97167 * 2 1 3 5 5 C 1.53203 * 109.15220 * 297.61724 * 4 2 1 6 6 H 1.08993 * 109.61070 * 62.93736 * 5 4 2 7 7 C 1.53000 * 109.53864 * 183.16147 * 5 4 2 8 8 H 1.09003 * 109.46679 * 304.55974 * 7 5 4 9 9 O 1.42900 * 109.47328 * 64.55941 * 7 5 4 10 10 C 1.50697 * 109.46977 * 184.56410 * 7 5 4 11 11 H 1.08006 * 120.00150 * 359.97438 * 10 7 5 12 12 C 1.37877 * 120.00249 * 179.97438 * 10 7 5 13 13 N 1.31519 * 119.99580 * 359.97438 * 12 10 7 14 14 Si 1.86792 * 120.00329 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.47129 * 59.99905 * 14 12 10 16 16 H 1.48495 * 109.47378 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47322 * 299.99892 * 14 12 10 18 18 C 1.53173 * 109.03907 * 303.02878 * 5 4 2 19 19 C 1.53086 * 109.17027 * 56.98184 * 18 5 4 20 20 O 1.42903 * 109.47659 * 120.02008 * 2 1 3 21 21 H 1.09001 * 109.47002 * 60.00091 * 1 2 3 22 22 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47050 * 300.00357 * 1 2 3 24 24 H 1.08992 * 109.47648 * 59.99784 * 3 2 1 25 25 H 1.09002 * 109.46637 * 180.02562 * 3 2 1 26 26 H 1.09007 * 109.47048 * 299.99476 * 3 2 1 27 27 H 1.08997 * 109.52280 * 57.53794 * 4 2 1 28 28 H 1.09007 * 109.51882 * 177.72075 * 4 2 1 29 29 H 0.96700 * 113.99893 * 59.99987 * 9 7 5 30 30 H 0.96996 * 119.99761 * 180.02562 * 13 12 10 31 31 H 1.09006 * 109.52794 * 297.07298 * 18 5 4 32 32 H 1.09004 * 109.52237 * 176.88955 * 18 5 4 33 33 H 1.08997 * 109.48854 * 182.40459 * 19 18 5 34 34 H 1.09006 * 109.48000 * 62.36490 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 1.5757 -2.1816 -1.2118 6 1 0.4868 -2.2195 -1.2411 7 6 2.1468 -2.9319 -2.4167 8 1 1.8628 -2.4159 -3.3339 9 8 3.5716 -2.9779 -2.3176 10 6 1.5992 -4.3357 -2.4399 11 1 0.9128 -4.6604 -1.6718 12 6 1.9744 -5.2056 -3.4416 13 7 2.8098 -4.8100 -4.3772 14 14 1.2962 -6.9458 -3.4700 15 1 -0.1845 -6.8984 -3.5720 16 1 1.8503 -7.6741 -4.6395 17 1 1.6841 -7.6487 -2.2206 18 6 2.0764 -2.8322 0.0814 19 6 1.5645 -2.0283 1.2794 20 8 2.0065 -0.6740 1.1665 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6770 1.9564 0.8899 25 1 3.1303 1.4422 -0.0005 26 1 1.6770 1.9563 -0.8901 27 1 1.6422 -0.2357 -2.1398 28 1 3.1299 -0.6874 -1.2709 29 1 3.8964 -3.4240 -1.5236 30 1 3.0734 -5.4219 -5.0822 31 1 3.1664 -2.8400 0.0870 32 1 1.7036 -3.8546 0.1427 33 1 1.9529 -2.4619 2.2009 34 1 0.4749 -2.0547 1.2961 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075576310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -138.757702 kcal Electronic energy + Delta-G solvation = -15465.801135 eV Core-core repulsion = 12976.033900 eV Total energy + Delta-G solvation = -2489.767235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.02071 -37.91677 -34.52393 -34.26452 -33.78824 -29.65125 -28.50589 -28.16734 -25.23884 -24.07464 -21.47609 -19.94161 -18.98965 -17.06363 -16.94334 -16.65276 -16.34712 -15.78175 -15.33119 -15.26116 -14.41969 -14.17567 -13.69326 -13.37807 -13.18796 -12.92841 -12.89559 -12.78364 -12.61759 -12.44490 -12.08421 -12.01274 -11.91769 -11.54349 -11.08962 -10.83129 -10.63531 -10.45078 -9.83508 -8.11449 -6.36173 1.39882 1.41134 1.49169 2.39189 2.91285 3.14045 3.85380 3.95395 3.99117 4.09848 4.23812 4.30455 4.42987 4.60491 4.63998 4.70082 4.81538 4.84386 4.92643 4.95961 5.08841 5.14712 5.21792 5.29859 5.34706 5.42732 5.53437 5.68904 5.81336 6.12774 6.42595 6.75138 7.34654 7.54963 8.92828 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048668 B = 0.008541 C = 0.008101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.183580 B = 3277.345540 C = 3455.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 C -0.133 4.133 4 C -0.127 4.127 5 C -0.103 4.103 6 H 0.064 0.936 7 C 0.233 3.767 8 H 0.014 0.986 9 O -0.581 6.581 10 C -0.576 4.576 11 H 0.062 0.938 12 C 0.021 3.979 13 N -0.904 5.904 14 Si 0.957 3.043 15 H -0.268 1.268 16 H -0.287 1.287 17 H -0.267 1.267 18 C -0.138 4.138 19 C 0.063 3.937 20 O -0.390 6.390 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.352 0.648 30 H 0.260 0.740 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 7.519 10.120 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.165 4.165 5 C -0.121 4.121 6 H 0.082 0.918 7 C 0.175 3.825 8 H 0.032 0.968 9 O -0.385 6.385 10 C -0.613 4.613 11 H 0.081 0.919 12 C -0.180 4.180 13 N -0.541 5.541 14 Si 0.781 3.219 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.175 4.175 19 C -0.013 4.013 20 O -0.310 6.310 21 H 0.092 0.908 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.198 0.802 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.158 7.901 9.520 13.052 hybrid contribution -0.265 -1.564 -0.321 1.619 sum -4.422 6.337 9.199 12.014 Atomic orbital electron populations 1.22401 0.94871 1.02591 1.03269 1.21617 0.93869 0.93134 0.84536 1.21750 1.01515 0.92470 1.03278 1.22129 1.00784 0.95623 0.97965 1.21727 0.99616 0.94514 0.96286 0.91755 1.19238 0.78259 0.93153 0.91811 0.96833 1.86490 1.24462 1.80389 1.47204 1.22032 1.28938 0.98993 1.11377 0.91949 1.25937 0.94567 1.02782 0.94759 1.70220 1.33289 1.36933 1.13705 0.85658 0.78835 0.79649 0.77711 1.19337 1.21295 1.19153 1.22051 1.00905 0.99898 0.94684 1.22652 0.99019 0.81519 0.98130 1.87872 1.74491 1.25209 1.43425 0.90821 0.92570 0.90827 0.90855 0.92624 0.89976 0.92065 0.92838 0.80221 0.93162 0.92428 0.91196 0.87550 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.38 7.94 71.98 0.57 -3.81 16 2 C 0.11 3.12 1.11 -10.76 -0.01 3.11 16 3 C -0.13 -3.18 8.85 71.98 0.64 -2.54 16 4 C -0.13 -4.54 4.13 30.69 0.13 -4.41 16 5 C -0.10 -4.10 1.75 -10.67 -0.02 -4.12 16 6 H 0.06 2.55 6.62 -2.39 -0.02 2.53 16 7 C 0.23 11.95 2.59 29.85 0.08 12.02 16 8 H 0.01 0.80 8.14 -2.39 -0.02 0.79 16 9 O -0.58 -30.81 12.11 -148.98 -1.80 -32.61 16 10 C -0.58 -31.29 8.10 25.60 0.21 -31.08 16 11 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 12 C 0.02 1.19 5.40 84.65 0.46 1.65 16 13 N -0.90 -54.77 12.84 21.45 0.28 -54.50 16 14 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 C -0.14 -4.88 4.84 30.68 0.15 -4.73 16 19 C 0.06 1.83 6.52 72.01 0.47 2.30 16 20 O -0.39 -12.17 10.24 -148.98 -1.52 -13.70 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.06 1.52 4.98 -2.39 -0.01 1.51 16 23 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.10 7.74 -2.38 -0.02 2.08 16 29 H 0.35 16.85 7.12 -74.06 -0.53 16.32 16 30 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.06 2.12 6.56 -2.38 -0.02 2.10 16 32 H 0.07 2.57 7.06 -2.38 -0.02 2.55 16 33 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.06 1.57 6.34 -2.38 -0.02 1.55 16 Total: -1.00 -63.99 264.20 2.19 -61.80 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.55 Total: 25.21 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 2.66 Total: -31.62 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.50 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -3.33 Total: -46.31 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -63.99 2.19 -61.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075576310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.958 kcal (2) G-P(sol) polarization free energy of solvation -63.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds