Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 H 1.09003 * 109.47016 * 55.00626 * 3 2 1 5 5 C 1.53005 * 109.46781 * 174.99951 * 3 2 1 6 6 S 1.81393 * 109.47512 * 295.00160 * 3 2 1 7 7 C 1.81399 * 103.00061 * 175.00011 * 6 3 2 8 8 C 1.53007 * 109.47014 * 180.02562 * 7 6 3 9 9 C 1.50694 * 115.54754 * 39.93561 * 8 7 6 10 10 H 1.08001 * 120.00112 * 264.88173 * 9 8 7 11 11 C 1.37879 * 119.99977 * 84.89143 * 9 8 7 12 12 N 1.31513 * 120.00084 * 353.90699 * 11 9 8 13 13 Si 1.86805 * 119.99886 * 173.90766 * 11 9 8 14 14 H 1.48497 * 109.46841 * 89.99914 * 13 11 9 15 15 H 1.48496 * 109.47254 * 210.00133 * 13 11 9 16 16 H 1.48496 * 109.47061 * 330.00164 * 13 11 9 17 17 C 1.52999 * 117.49720 * 254.22371 * 8 7 6 18 18 C 1.53000 * 60.00177 * 252.51366 * 17 8 7 19 19 H 1.08998 * 109.47410 * 59.99360 * 1 2 3 20 20 H 1.09008 * 109.47371 * 299.99705 * 1 2 3 21 21 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46700 * 120.00411 * 2 1 3 23 23 H 1.08998 * 109.46865 * 240.00150 * 2 1 3 24 24 H 1.08993 * 109.46818 * 60.00567 * 5 3 2 25 25 H 1.09000 * 109.46574 * 179.97438 * 5 3 2 26 26 H 1.08999 * 109.47366 * 299.99985 * 5 3 2 27 27 H 1.08995 * 109.47488 * 299.99899 * 7 6 3 28 28 H 1.08996 * 109.46954 * 60.00243 * 7 6 3 29 29 H 0.97000 * 119.99871 * 175.02040 * 12 11 9 30 30 H 1.09005 * 117.49963 * 0.02562 * 17 8 7 31 31 H 1.09000 * 117.49598 * 145.02301 * 17 8 7 32 32 H 1.08995 * 117.50131 * 252.51215 * 18 17 8 33 33 H 1.08997 * 117.51828 * 107.48371 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4442 0.1257 6 16 1.5601 2.2536 -1.5499 7 6 2.1077 3.9650 -1.3014 8 6 1.7689 4.7941 -2.5420 9 6 0.4328 4.5012 -3.1743 10 1 0.3663 3.8078 -3.9997 11 6 -0.7049 5.1187 -2.6993 12 7 -0.6443 5.8691 -1.6210 13 14 -2.3322 4.8893 -3.5875 14 1 -3.0391 3.7092 -3.0283 15 1 -3.1709 6.1011 -3.4050 16 1 -2.0801 4.6752 -5.0351 17 6 2.9219 5.1783 -3.4714 18 6 2.2687 6.2396 -2.5837 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.9993 0.9053 -0.7161 25 1 3.9281 2.4719 0.1253 26 1 3.8532 0.9569 1.0571 27 1 1.6005 4.3865 -0.4336 28 1 3.1850 3.9813 -1.1362 29 1 -1.4272 6.3612 -1.3280 30 1 3.9218 4.8401 -3.1993 31 1 2.7142 5.2193 -4.5406 32 1 1.6313 6.9787 -3.0689 33 1 2.8385 6.6000 -1.7273 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -1.009160 kcal Electronic energy + Delta-G solvation = -12634.721081 eV Core-core repulsion = 10593.679942 eV Total energy + Delta-G solvation = -2041.041139 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -36.52763 -35.28835 -31.88409 -30.02688 -27.45049 -25.25109 -23.49673 -21.11539 -20.98776 -19.08663 -16.20506 -15.76350 -14.59939 -14.34022 -13.71171 -13.62651 -13.52291 -13.15809 -12.59937 -12.39106 -11.68890 -11.56547 -11.16279 -10.96525 -10.91051 -10.83385 -10.62237 -10.47502 -10.39675 -10.11622 -9.59592 -8.92644 -8.69164 -8.38026 -7.97047 -6.54007 -5.98903 -4.02422 2.62765 3.35065 3.41597 3.45322 3.72442 4.47530 5.04835 5.24499 5.30715 5.36287 5.45999 5.68946 5.80122 5.87882 6.01493 6.05099 6.16932 6.21506 6.23434 6.35554 6.48301 6.51184 6.55333 6.69598 6.75265 6.87855 7.08096 7.40655 7.50627 7.93542 8.43769 8.96859 9.62283 11.10359 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.011573 C = 0.008854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.392060 B = 2418.829984 C = 3161.781495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.089 4.089 4 H 0.076 0.924 5 C -0.142 4.142 6 S -0.209 6.209 7 C -0.032 4.032 8 C 0.057 3.943 9 C -0.480 4.480 10 H 0.062 0.938 11 C 0.077 3.923 12 N -0.879 5.879 13 Si 0.886 3.114 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.274 1.274 17 C -0.208 4.208 18 C -0.153 4.153 19 H 0.074 0.926 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.812 -6.971 3.471 9.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.218 4.218 4 H 0.094 0.906 5 C -0.202 4.202 6 S 0.020 5.980 7 C -0.180 4.180 8 C 0.056 3.944 9 C -0.518 4.518 10 H 0.080 0.920 11 C -0.126 4.126 12 N -0.516 5.516 13 Si 0.714 3.286 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.199 1.199 17 C -0.245 4.245 18 C -0.193 4.193 19 H 0.093 0.907 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.170 -7.381 2.776 8.921 hybrid contribution -0.264 0.700 0.787 1.086 sum 3.906 -6.681 3.563 8.520 Atomic orbital electron populations 1.21839 0.95261 1.00842 1.03320 1.21252 0.96575 0.93970 1.01561 1.23269 0.97913 0.99406 1.01233 0.90595 1.22055 0.94751 1.01926 1.01422 1.86999 1.80765 1.08664 1.21614 1.22994 0.98692 0.93194 1.03137 1.18476 0.92735 0.92018 0.91219 1.20296 0.89236 1.26124 1.16191 0.92011 1.24883 0.98415 0.95217 0.94098 1.70011 1.30002 1.29712 1.21835 0.86690 0.84034 0.77609 0.80293 1.20412 1.21388 1.19908 1.23060 0.96653 1.07370 0.97430 1.22559 1.02632 0.94121 0.99983 0.90727 0.93015 0.93416 0.92060 0.91606 0.91906 0.92780 0.93095 0.90728 0.93719 0.93176 0.91711 0.90305 0.89876 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.74 37.16 0.36 -1.93 16 2 C -0.10 -1.36 5.40 -26.73 -0.14 -1.50 16 3 C -0.09 -1.48 2.82 -26.73 -0.08 -1.55 16 4 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 5 C -0.14 -2.05 9.10 37.16 0.34 -1.71 16 6 S -0.21 -4.41 18.81 -107.50 -2.02 -6.43 16 7 C -0.03 -0.72 5.75 37.16 0.21 -0.50 16 8 C 0.06 1.40 1.65 -155.66 -0.26 1.15 16 9 C -0.48 -13.05 7.55 -34.44 -0.26 -13.31 16 10 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 11 C 0.08 2.11 5.39 -17.82 -0.10 2.02 16 12 N -0.88 -24.81 12.93 55.43 0.72 -24.09 16 13 Si 0.89 21.44 29.55 -169.99 -5.02 16.41 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 C -0.21 -4.59 9.88 -26.73 -0.26 -4.85 16 18 C -0.15 -3.60 9.47 -26.73 -0.25 -3.85 16 19 H 0.07 1.28 7.13 -51.93 -0.37 0.91 16 20 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.81 6.92 -51.93 -0.36 0.45 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.04 0.92 6.95 -51.93 -0.36 0.56 16 29 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 30 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 31 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 32 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 284.13 15.07 4.28 4.28 Total: -1.00 -27.75 284.13 -8.19 -35.93 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.71 Total: -0.08 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -0.44 Total: -26.03 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.72 Total: -24.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -2.02 Total: -6.43 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.75 -8.19 -35.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.926 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds