Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 H 1.09003 * 109.47016 * 55.00626 * 3 2 1 5 5 C 1.53005 * 109.46781 * 174.99951 * 3 2 1 6 6 S 1.81393 * 109.47512 * 295.00160 * 3 2 1 7 7 C 1.81399 * 103.00061 * 175.00011 * 6 3 2 8 8 C 1.53007 * 109.47014 * 180.02562 * 7 6 3 9 9 C 1.50694 * 115.54754 * 39.93561 * 8 7 6 10 10 H 1.08001 * 120.00112 * 264.88173 * 9 8 7 11 11 C 1.37879 * 119.99977 * 84.89143 * 9 8 7 12 12 N 1.31513 * 120.00084 * 353.90699 * 11 9 8 13 13 Si 1.86805 * 119.99886 * 173.90766 * 11 9 8 14 14 H 1.48497 * 109.46841 * 89.99914 * 13 11 9 15 15 H 1.48496 * 109.47254 * 210.00133 * 13 11 9 16 16 H 1.48496 * 109.47061 * 330.00164 * 13 11 9 17 17 C 1.52999 * 117.49720 * 254.22371 * 8 7 6 18 18 C 1.53000 * 60.00177 * 252.51366 * 17 8 7 19 19 H 1.08998 * 109.47410 * 59.99360 * 1 2 3 20 20 H 1.09008 * 109.47371 * 299.99705 * 1 2 3 21 21 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.46700 * 120.00411 * 2 1 3 23 23 H 1.08998 * 109.46865 * 240.00150 * 2 1 3 24 24 H 1.08993 * 109.46818 * 60.00567 * 5 3 2 25 25 H 1.09000 * 109.46574 * 179.97438 * 5 3 2 26 26 H 1.08999 * 109.47366 * 299.99985 * 5 3 2 27 27 H 1.08995 * 109.47488 * 299.99899 * 7 6 3 28 28 H 1.08996 * 109.46954 * 60.00243 * 7 6 3 29 29 H 0.97000 * 119.99871 * 175.02040 * 12 11 9 30 30 H 1.09005 * 117.49963 * 0.02562 * 17 8 7 31 31 H 1.09000 * 117.49598 * 145.02301 * 17 8 7 32 32 H 1.08995 * 117.50131 * 252.51215 * 18 17 8 33 33 H 1.08997 * 117.51828 * 107.48371 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5648 1.4442 0.1257 6 16 1.5601 2.2536 -1.5499 7 6 2.1077 3.9650 -1.3014 8 6 1.7689 4.7941 -2.5420 9 6 0.4328 4.5012 -3.1743 10 1 0.3663 3.8078 -3.9997 11 6 -0.7049 5.1187 -2.6993 12 7 -0.6443 5.8691 -1.6210 13 14 -2.3322 4.8893 -3.5875 14 1 -3.0391 3.7092 -3.0283 15 1 -3.1709 6.1011 -3.4050 16 1 -2.0801 4.6752 -5.0351 17 6 2.9219 5.1783 -3.4714 18 6 2.2687 6.2396 -2.5837 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3634 0.5138 0.8901 21 1 -0.3634 -1.0277 -0.0005 22 1 1.8932 -0.5139 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.9993 0.9053 -0.7161 25 1 3.9281 2.4719 0.1253 26 1 3.8532 0.9569 1.0571 27 1 1.6005 4.3865 -0.4336 28 1 3.1850 3.9813 -1.1362 29 1 -1.4272 6.3612 -1.3280 30 1 3.9218 4.8401 -3.1993 31 1 2.7142 5.2193 -4.5406 32 1 1.6313 6.9787 -3.0689 33 1 2.8385 6.6000 -1.7273 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -14.158410 kcal Electronic energy + Delta-G solvation = -12635.291276 eV Core-core repulsion = 10593.679942 eV Total energy + Delta-G solvation = -2041.611334 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.40155 -36.50353 -33.96041 -31.24040 -29.22770 -27.31707 -24.67676 -22.92890 -22.30042 -20.97489 -18.13364 -17.20987 -16.61017 -15.99270 -15.36756 -15.19315 -14.80982 -14.57909 -14.13971 -14.03545 -13.47302 -12.96872 -12.83756 -12.76086 -12.53381 -12.35499 -12.17497 -12.00778 -11.82304 -11.73226 -11.45126 -10.72622 -10.45283 -10.34447 -9.82979 -8.22175 -8.06542 -6.14955 1.08752 1.40730 1.43352 1.51418 2.12067 2.46301 3.23224 3.48701 3.83886 4.03654 4.23068 4.30494 4.41194 4.52017 4.62801 4.67872 4.69450 4.75989 4.90167 4.96777 5.01483 5.03368 5.09469 5.22292 5.24249 5.31711 5.49124 5.57897 5.62504 5.80457 6.40775 6.86273 7.51257 9.01068 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.011573 C = 0.008854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.392060 B = 2418.829984 C = 3161.781495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C -0.075 4.075 4 H 0.067 0.933 5 C -0.138 4.138 6 S -0.257 6.257 7 C -0.018 4.018 8 C 0.026 3.974 9 C -0.486 4.486 10 H 0.046 0.954 11 C 0.035 3.965 12 N -0.905 5.905 13 Si 0.937 3.063 14 H -0.279 1.279 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.185 4.185 18 C -0.156 4.156 19 H 0.042 0.958 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.770 -8.341 4.023 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.130 4.130 3 C -0.204 4.204 4 H 0.086 0.914 5 C -0.197 4.197 6 S -0.029 6.029 7 C -0.166 4.166 8 C 0.025 3.975 9 C -0.524 4.524 10 H 0.064 0.936 11 C -0.165 4.165 12 N -0.543 5.543 13 Si 0.764 3.236 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.222 4.222 18 C -0.196 4.196 19 H 0.061 0.939 20 H 0.068 0.932 21 H 0.090 0.910 22 H 0.113 0.887 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.131 -8.744 3.312 10.666 hybrid contribution -0.531 1.049 0.652 1.344 sum 4.600 -7.695 3.963 9.802 Atomic orbital electron populations 1.21821 0.95916 1.01886 1.01631 1.21295 0.95989 0.92474 1.03224 1.23360 0.99715 0.99921 0.97398 0.91404 1.22008 0.92592 1.01862 1.03194 1.87029 1.81884 1.08342 1.25637 1.22741 0.99421 0.93588 1.00885 1.18624 0.92883 0.93111 0.92901 1.20426 0.90844 1.25484 1.15660 0.93598 1.25467 1.01005 0.95293 0.94776 1.70097 1.30583 1.30716 1.22898 0.85884 0.80904 0.77461 0.79397 1.20492 1.20881 1.19583 1.23063 0.97019 1.05193 0.96901 1.22478 1.02821 0.93404 1.00852 0.93900 0.93175 0.91046 0.88681 0.91383 0.91464 0.93696 0.90048 0.93538 0.91744 0.93346 0.89003 0.90421 0.91996 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.74 71.98 0.70 -3.62 16 2 C -0.09 -2.36 5.40 30.59 0.17 -2.19 16 3 C -0.08 -2.34 2.82 30.59 0.09 -2.25 16 4 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.14 -3.54 9.10 71.98 0.66 -2.89 16 6 S -0.26 -10.78 18.81 -56.49 -1.06 -11.84 16 7 C -0.02 -0.80 5.75 71.98 0.41 -0.39 16 8 C 0.03 1.28 1.65 -52.93 -0.09 1.19 16 9 C -0.49 -26.75 7.55 25.60 0.19 -26.56 16 10 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 11 C 0.03 1.94 5.39 84.66 0.46 2.39 16 12 N -0.90 -51.94 12.93 21.45 0.28 -51.66 16 13 Si 0.94 44.52 29.55 68.60 2.03 46.54 16 14 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 17 C -0.18 -7.91 9.88 30.59 0.30 -7.61 16 18 C -0.16 -7.29 9.47 30.60 0.29 -7.00 16 19 H 0.04 1.46 7.13 -2.39 -0.02 1.44 16 20 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.23 6.92 -2.39 -0.02 1.22 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 28 H 0.06 2.57 6.95 -2.39 -0.02 2.56 16 29 H 0.26 14.23 8.32 -92.71 -0.77 13.45 16 30 H 0.09 3.42 8.09 -2.38 -0.02 3.40 16 31 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.08 3.25 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -59.51 284.13 5.46 -54.05 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.04 Total: 11.82 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 3.18 Total: -48.91 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.28 Total: -51.66 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -10.78 SS G_CDS: -1.06 Total: -11.84 kcal Total: -59.51 5.46 -54.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.893 kcal (2) G-P(sol) polarization free energy of solvation -59.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds