Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46932 * 2 1 4 4 H 1.09002 * 109.46787 * 304.99865 * 3 2 1 5 5 C 1.52998 * 109.47185 * 184.99974 * 3 2 1 6 6 S 1.81403 * 109.46996 * 64.99686 * 3 2 1 7 7 C 1.81397 * 102.99855 * 185.00094 * 6 3 2 8 8 C 1.53006 * 109.46925 * 180.02562 * 7 6 3 9 9 C 1.50702 * 115.56133 * 319.87503 * 8 7 6 10 10 H 1.07994 * 119.99924 * 96.14953 * 9 8 7 11 11 C 1.37883 * 119.99978 * 276.15297 * 9 8 7 12 12 N 1.31517 * 119.99722 * 8.05435 * 11 9 8 13 13 Si 1.86793 * 119.99895 * 188.05999 * 11 9 8 14 14 H 1.48494 * 109.47416 * 89.99553 * 13 11 9 15 15 H 1.48496 * 109.47315 * 209.99750 * 13 11 9 16 16 H 1.48502 * 109.46993 * 329.99640 * 13 11 9 17 17 C 1.53000 * 117.49856 * 174.18872 * 8 7 6 18 18 C 1.52996 * 60.03305 * 252.49874 * 17 8 7 19 19 H 1.08990 * 109.47063 * 299.99843 * 1 2 3 20 20 H 1.08998 * 109.47209 * 60.00388 * 1 2 3 21 21 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47515 * 240.00152 * 2 1 3 23 23 H 1.08998 * 109.47209 * 119.99612 * 2 1 3 24 24 H 1.08998 * 109.46974 * 300.00122 * 5 3 2 25 25 H 1.08999 * 109.47165 * 59.99943 * 5 3 2 26 26 H 1.09004 * 109.46987 * 180.02562 * 5 3 2 27 27 H 1.09003 * 109.47309 * 60.00293 * 7 6 3 28 28 H 1.08998 * 109.47294 * 299.99819 * 7 6 3 29 29 H 0.97002 * 119.99332 * 174.99096 * 12 11 9 30 30 H 1.08999 * 117.49716 * 0.02562 * 17 8 7 31 31 H 1.09000 * 117.49790 * 144.99467 * 17 8 7 32 32 H 1.08997 * 117.50381 * 107.49958 * 18 17 8 33 33 H 1.09001 * 117.49650 * 252.52952 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4445 -0.1257 6 16 1.5600 2.2536 1.5500 7 6 2.1075 3.9650 1.3016 8 6 1.7698 4.7937 2.5427 9 6 0.4322 4.5041 3.1737 10 1 0.3654 3.8229 4.0090 11 6 -0.7063 5.1088 2.6844 12 7 -0.6523 5.8112 1.5739 13 14 -2.3252 4.9305 3.5991 14 1 -2.4618 6.0338 4.5834 15 1 -3.4497 4.9887 2.6310 16 1 -2.3511 3.6269 4.3100 17 6 2.2738 6.2376 2.5867 18 6 2.9232 5.1741 3.4744 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.9994 0.9054 0.7161 25 1 3.8532 0.9571 -1.0571 26 1 3.9281 2.4722 -0.1253 27 1 1.6003 4.3865 0.4338 28 1 3.1848 3.9815 1.1364 29 1 -1.4654 6.1757 1.1906 30 1 2.8456 6.5973 1.7313 31 1 1.6378 6.9782 3.0716 32 1 3.9226 4.8340 3.2033 33 1 2.7140 5.2147 4.5434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = -0.707982 kcal Electronic energy + Delta-G solvation = -12637.067889 eV Core-core repulsion = 10596.039810 eV Total energy + Delta-G solvation = -2041.028079 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.52075 -35.28104 -31.88946 -30.02130 -27.43521 -25.25080 -23.49119 -21.12107 -20.98281 -19.08395 -16.19909 -15.75763 -14.60177 -14.34045 -13.70886 -13.61838 -13.52005 -13.15116 -12.59674 -12.38640 -11.69074 -11.56099 -11.15221 -10.95857 -10.91911 -10.81454 -10.61569 -10.49340 -10.39416 -10.12202 -9.56973 -8.93019 -8.68899 -8.40924 -7.96252 -6.52416 -5.98506 -4.01489 2.63902 3.34007 3.40765 3.45409 3.73729 4.46699 5.05442 5.25104 5.31150 5.34668 5.46592 5.69481 5.80614 5.88434 6.02011 6.05285 6.17442 6.22006 6.23844 6.35917 6.48788 6.51627 6.55392 6.70061 6.74956 6.88427 7.07423 7.40930 7.49584 7.94598 8.44265 8.96941 9.62236 11.10372 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.011558 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.416226 B = 2421.964809 C = 3159.465699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.095 4.095 3 C -0.090 4.090 4 H 0.076 0.924 5 C -0.142 4.142 6 S -0.208 6.208 7 C -0.031 4.031 8 C 0.058 3.942 9 C -0.482 4.482 10 H 0.062 0.938 11 C 0.078 3.922 12 N -0.879 5.879 13 Si 0.888 3.112 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.272 1.272 17 C -0.156 4.156 18 C -0.208 4.208 19 H 0.074 0.926 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.259 0.741 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.762 -7.019 -3.480 9.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.218 4.218 4 H 0.094 0.906 5 C -0.202 4.202 6 S 0.021 5.979 7 C -0.180 4.180 8 C 0.057 3.943 9 C -0.521 4.521 10 H 0.081 0.919 11 C -0.125 4.125 12 N -0.516 5.516 13 Si 0.716 3.284 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.197 1.197 17 C -0.195 4.195 18 C -0.245 4.245 19 H 0.093 0.907 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.145 -7.334 -2.721 8.852 hybrid contribution -0.271 0.679 -0.809 1.090 sum 3.874 -6.655 -3.529 8.471 Atomic orbital electron populations 1.21838 0.95261 1.00829 1.03321 1.21254 0.96581 0.93979 1.01546 1.23271 0.97894 0.99403 1.01277 0.90599 1.22055 0.94774 1.01918 1.01409 1.87005 1.80760 1.08628 1.21546 1.22974 0.98617 0.93203 1.03157 1.18486 0.92701 0.91933 0.91192 1.20281 0.89507 1.26203 1.16124 0.91949 1.24898 0.98600 0.94281 0.94768 1.69974 1.27902 1.35083 1.18599 0.86655 0.83433 0.78553 0.79780 1.20827 1.21307 1.19665 1.22585 1.02765 0.94148 1.00051 1.23062 0.96733 1.07326 0.97400 0.90706 0.93020 0.93432 0.92078 0.91615 0.91917 0.93110 0.92784 0.90642 0.93793 0.93111 0.91978 0.89946 0.91683 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.74 37.16 0.36 -1.92 16 2 C -0.10 -1.36 5.40 -26.73 -0.14 -1.50 16 3 C -0.09 -1.48 2.82 -26.73 -0.08 -1.56 16 4 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 5 C -0.14 -2.05 9.10 37.16 0.34 -1.71 16 6 S -0.21 -4.39 18.82 -107.50 -2.02 -6.41 16 7 C -0.03 -0.70 5.75 37.16 0.21 -0.49 16 8 C 0.06 1.44 1.62 -155.62 -0.25 1.19 16 9 C -0.48 -13.11 7.54 -34.44 -0.26 -13.37 16 10 H 0.06 1.75 7.83 -52.49 -0.41 1.33 16 11 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 12 N -0.88 -24.79 13.03 55.43 0.72 -24.07 16 13 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 17 C -0.16 -3.66 9.58 -26.73 -0.26 -3.92 16 18 C -0.21 -4.59 9.88 -26.69 -0.26 -4.85 16 19 H 0.07 1.28 7.13 -51.93 -0.37 0.91 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.81 6.92 -51.93 -0.36 0.45 16 27 H 0.07 1.85 8.14 -51.92 -0.42 1.42 16 28 H 0.04 0.90 6.95 -51.92 -0.36 0.54 16 29 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 30 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 32 H 0.06 1.30 8.09 -51.93 -0.42 0.88 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 284.34 15.07 4.28 4.28 Total: -1.00 -27.72 284.34 -8.18 -35.90 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.71 Total: -0.05 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -0.43 Total: -26.08 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.72 Total: -24.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -2.02 Total: -6.41 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.72 -8.18 -35.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.193 kcal (2) G-P(sol) polarization free energy of solvation -27.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds