Wall clock time and date at job start Mon Mar 30 2020 02:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46932 * 2 1 4 4 H 1.09002 * 109.46787 * 304.99865 * 3 2 1 5 5 C 1.52998 * 109.47185 * 184.99974 * 3 2 1 6 6 S 1.81403 * 109.46996 * 64.99686 * 3 2 1 7 7 C 1.81397 * 102.99855 * 185.00094 * 6 3 2 8 8 C 1.53006 * 109.46925 * 180.02562 * 7 6 3 9 9 C 1.50702 * 115.56133 * 319.87503 * 8 7 6 10 10 H 1.07994 * 119.99924 * 96.14953 * 9 8 7 11 11 C 1.37883 * 119.99978 * 276.15297 * 9 8 7 12 12 N 1.31517 * 119.99722 * 8.05435 * 11 9 8 13 13 Si 1.86793 * 119.99895 * 188.05999 * 11 9 8 14 14 H 1.48494 * 109.47416 * 89.99553 * 13 11 9 15 15 H 1.48496 * 109.47315 * 209.99750 * 13 11 9 16 16 H 1.48502 * 109.46993 * 329.99640 * 13 11 9 17 17 C 1.53000 * 117.49856 * 174.18872 * 8 7 6 18 18 C 1.52996 * 60.03305 * 252.49874 * 17 8 7 19 19 H 1.08990 * 109.47063 * 299.99843 * 1 2 3 20 20 H 1.08998 * 109.47209 * 60.00388 * 1 2 3 21 21 H 1.09004 * 109.46756 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47515 * 240.00152 * 2 1 3 23 23 H 1.08998 * 109.47209 * 119.99612 * 2 1 3 24 24 H 1.08998 * 109.46974 * 300.00122 * 5 3 2 25 25 H 1.08999 * 109.47165 * 59.99943 * 5 3 2 26 26 H 1.09004 * 109.46987 * 180.02562 * 5 3 2 27 27 H 1.09003 * 109.47309 * 60.00293 * 7 6 3 28 28 H 1.08998 * 109.47294 * 299.99819 * 7 6 3 29 29 H 0.97002 * 119.99332 * 174.99096 * 12 11 9 30 30 H 1.08999 * 117.49716 * 0.02562 * 17 8 7 31 31 H 1.09000 * 117.49790 * 144.99467 * 17 8 7 32 32 H 1.08997 * 117.50381 * 107.49958 * 18 17 8 33 33 H 1.09001 * 117.49650 * 252.52952 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4445 -0.1257 6 16 1.5600 2.2536 1.5500 7 6 2.1075 3.9650 1.3016 8 6 1.7698 4.7937 2.5427 9 6 0.4322 4.5041 3.1737 10 1 0.3654 3.8229 4.0090 11 6 -0.7063 5.1088 2.6844 12 7 -0.6523 5.8112 1.5739 13 14 -2.3252 4.9305 3.5991 14 1 -2.4618 6.0338 4.5834 15 1 -3.4497 4.9887 2.6310 16 1 -2.3511 3.6269 4.3100 17 6 2.2738 6.2376 2.5867 18 6 2.9232 5.1741 3.4744 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.9994 0.9054 0.7161 25 1 3.8532 0.9571 -1.0571 26 1 3.9281 2.4722 -0.1253 27 1 1.6003 4.3865 0.4338 28 1 3.1848 3.9815 1.1364 29 1 -1.4654 6.1757 1.1906 30 1 2.8456 6.5973 1.7313 31 1 1.6378 6.9782 3.0716 32 1 3.9226 4.8340 3.2033 33 1 2.7140 5.2147 4.5434 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862433.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:01 Heat of formation + Delta-G solvation = -13.831275 kcal Electronic energy + Delta-G solvation = -12637.636958 eV Core-core repulsion = 10596.039810 eV Total energy + Delta-G solvation = -2041.597148 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.39477 -36.49603 -33.96471 -31.23395 -29.21262 -27.31654 -24.67063 -22.93688 -22.29372 -20.97127 -18.12932 -17.20266 -16.61222 -15.99406 -15.36296 -15.18528 -14.80415 -14.57355 -14.13619 -14.03243 -13.47359 -12.95113 -12.82640 -12.74995 -12.54283 -12.36743 -12.16862 -12.01430 -11.81723 -11.72539 -11.42740 -10.75325 -10.45064 -10.34481 -9.82556 -8.20230 -8.06322 -6.13910 1.09865 1.40439 1.42457 1.51717 2.13241 2.45791 3.22495 3.48118 3.84497 4.04293 4.23232 4.31064 4.41596 4.52623 4.63226 4.67786 4.69782 4.76451 4.90570 4.96884 5.01514 5.03948 5.10163 5.21701 5.24548 5.32290 5.49981 5.58768 5.61221 5.81292 6.41267 6.86345 7.51368 9.01171 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.011558 C = 0.008860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.416226 B = 2421.964809 C = 3159.465699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C -0.075 4.075 4 H 0.067 0.933 5 C -0.138 4.138 6 S -0.256 6.256 7 C -0.017 4.017 8 C 0.027 3.973 9 C -0.488 4.488 10 H 0.046 0.954 11 C 0.036 3.964 12 N -0.905 5.905 13 Si 0.939 3.061 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.272 1.272 17 C -0.159 4.159 18 C -0.185 4.185 19 H 0.042 0.958 20 H 0.049 0.951 21 H 0.070 0.930 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.258 0.742 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -8.374 -4.024 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.204 4.204 4 H 0.086 0.914 5 C -0.197 4.197 6 S -0.028 6.028 7 C -0.166 4.166 8 C 0.026 3.974 9 C -0.527 4.527 10 H 0.064 0.936 11 C -0.165 4.165 12 N -0.543 5.543 13 Si 0.766 3.234 14 H -0.204 1.204 15 H -0.210 1.210 16 H -0.197 1.197 17 C -0.198 4.198 18 C -0.222 4.222 19 H 0.062 0.938 20 H 0.068 0.932 21 H 0.089 0.911 22 H 0.113 0.887 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.090 -8.680 -3.248 10.574 hybrid contribution -0.532 1.027 -0.673 1.338 sum 4.558 -7.653 -3.921 9.732 Atomic orbital electron populations 1.21818 0.95879 1.01881 1.01659 1.21298 0.96030 0.92471 1.03193 1.23360 0.99680 0.99925 0.97446 0.91412 1.22008 0.92633 1.01844 1.03177 1.87032 1.81877 1.08296 1.25563 1.22720 0.99322 0.93606 1.00912 1.18634 0.92853 0.93015 0.92880 1.20400 0.91116 1.25569 1.15584 0.93553 1.25480 1.01230 0.94354 0.95406 1.70063 1.28369 1.36159 1.19677 0.85850 0.80382 0.78406 0.78802 1.20351 1.21013 1.19671 1.22505 1.02965 0.93436 1.00931 1.23068 0.97087 1.05140 0.96891 0.93842 0.93168 0.91064 0.88714 0.91409 0.91478 0.90068 0.93712 0.93451 0.91852 0.93297 0.90612 0.92067 0.88992 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.74 71.98 0.70 -3.60 16 2 C -0.09 -2.36 5.40 30.60 0.17 -2.19 16 3 C -0.08 -2.35 2.82 30.60 0.09 -2.26 16 4 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 5 C -0.14 -3.55 9.10 71.98 0.66 -2.90 16 6 S -0.26 -10.74 18.82 -56.49 -1.06 -11.80 16 7 C -0.02 -0.77 5.75 71.98 0.41 -0.36 16 8 C 0.03 1.35 1.62 -52.90 -0.09 1.26 16 9 C -0.49 -26.88 7.54 25.60 0.19 -26.68 16 10 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 11 C 0.04 1.99 5.39 84.66 0.46 2.44 16 12 N -0.90 -51.89 13.03 21.45 0.28 -51.61 16 13 Si 0.94 44.53 29.55 68.60 2.03 46.56 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 16 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 17 C -0.16 -7.42 9.58 30.59 0.29 -7.13 16 18 C -0.18 -7.91 9.88 30.62 0.30 -7.61 16 19 H 0.04 1.47 7.13 -2.39 -0.02 1.46 16 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.23 6.92 -2.39 -0.02 1.21 16 27 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 2.54 6.95 -2.39 -0.02 2.52 16 29 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 30 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.06 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.09 3.43 8.09 -2.39 -0.02 3.41 16 33 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -59.44 284.34 5.47 -53.97 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 1.04 Total: 11.90 kcal Atomic # 6 Polarization: -52.20 SS G_CDS: 3.18 Total: -49.02 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.28 Total: -51.61 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -10.74 SS G_CDS: -1.06 Total: -11.80 kcal Total: -59.44 5.47 -53.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862433.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.138 kcal (2) G-P(sol) polarization free energy of solvation -59.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds