Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46863 * 240.00451 * 2 1 3 5 5 S 1.81401 * 109.47138 * 120.00368 * 2 1 3 6 6 C 1.81402 * 102.99936 * 59.99848 * 5 2 1 7 7 C 1.52998 * 109.46821 * 184.14696 * 6 5 2 8 8 C 1.50700 * 115.55421 * 294.75025 * 7 6 5 9 9 H 1.08005 * 120.00022 * 114.80345 * 8 7 6 10 10 C 1.37872 * 120.00144 * 294.53609 * 8 7 6 11 11 N 1.31509 * 120.00109 * 175.69747 * 10 8 7 12 12 Si 1.86802 * 119.99698 * 355.69379 * 10 8 7 13 13 H 1.48502 * 109.47178 * 93.72962 * 12 10 8 14 14 H 1.48506 * 109.46823 * 213.72554 * 12 10 8 15 15 H 1.48495 * 109.47218 * 333.72540 * 12 10 8 16 16 C 1.53001 * 117.49834 * 80.42465 * 7 6 5 17 17 C 1.53000 * 117.49802 * 149.07874 * 7 6 5 18 18 H 1.09000 * 109.46706 * 299.99213 * 1 2 3 19 19 H 1.08996 * 109.47175 * 59.99952 * 1 2 3 20 20 H 1.08998 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47058 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47400 * 300.00800 * 3 2 1 23 23 H 1.09003 * 109.46930 * 60.00305 * 3 2 1 24 24 H 1.09006 * 109.46877 * 299.99648 * 4 2 1 25 25 H 1.08996 * 109.47554 * 59.99829 * 4 2 1 26 26 H 1.08992 * 109.46924 * 180.02562 * 4 2 1 27 27 H 1.09006 * 109.46749 * 64.15184 * 6 5 2 28 28 H 1.08993 * 109.47461 * 304.15126 * 6 5 2 29 29 H 0.97001 * 120.00239 * 179.97438 * 11 10 8 30 30 H 1.09000 * 117.50137 * 215.00581 * 16 7 6 31 31 H 1.09000 * 117.49712 * 0.02562 * 16 7 6 32 32 H 1.09007 * 117.49984 * 359.97438 * 17 7 6 33 33 H 1.09005 * 117.50096 * 144.97160 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 2.1348 -0.8552 1.4811 6 6 1.4375 -2.5205 1.3039 7 6 1.7762 -3.3497 2.5443 8 6 3.2406 -3.6366 2.7545 9 1 3.7535 -3.2271 3.6122 10 6 3.9244 -4.4265 1.8548 11 7 5.2198 -4.6078 1.9908 12 14 3.0108 -5.2391 0.4425 13 1 3.0872 -4.3720 -0.7606 14 1 3.6304 -6.5553 0.1443 15 1 1.5885 -5.4360 0.8213 16 6 0.9108 -3.1444 3.7892 17 6 0.7772 -4.4287 2.9671 18 1 -0.3633 0.5137 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9564 -0.8899 23 1 1.6768 1.9563 0.8900 24 1 1.6767 -1.7489 -1.2493 25 1 1.6767 -0.2074 -2.1393 26 1 3.1299 -0.7216 -1.2491 27 1 1.8600 -2.9991 0.4204 28 1 0.3550 -2.4517 1.1973 29 1 5.7009 -5.1638 1.3581 30 1 1.4007 -3.2168 4.7603 31 1 0.0999 -2.4189 3.7244 32 1 -0.1216 -4.5474 2.3619 33 1 1.1792 -5.3462 3.3969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = 6.770324 kcal Electronic energy + Delta-G solvation = -12896.465464 eV Core-core repulsion = 10855.761669 eV Total energy + Delta-G solvation = -2040.703796 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -36.90214 -35.97128 -32.07726 -28.42437 -27.18312 -26.82809 -25.21594 -21.52929 -20.35930 -18.99346 -16.53465 -15.51291 -14.96834 -14.22246 -14.05592 -14.02077 -13.60197 -13.14334 -12.70439 -12.34234 -12.25832 -11.91888 -11.52074 -11.36163 -10.98114 -10.87074 -10.69262 -10.68036 -10.42715 -10.16294 -9.50352 -9.09902 -8.98208 -8.59185 -8.31415 -6.82102 -6.06625 -4.06454 2.33543 3.25024 3.35956 3.39952 3.42713 4.43534 4.96295 4.97038 4.99828 5.26956 5.32568 5.64672 5.68239 5.71629 5.84487 5.90763 5.94900 5.97256 5.98346 6.07939 6.17497 6.21885 6.37355 6.41786 6.46975 6.53689 6.74758 7.05923 7.15629 7.75862 8.53955 8.97192 9.56563 11.05604 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.012172 C = 0.010818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.865137 B = 2299.778757 C = 2587.692691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.121 4.121 4 C -0.141 4.141 5 S -0.210 6.210 6 C -0.045 4.045 7 C 0.012 3.988 8 C -0.474 4.474 9 H 0.078 0.922 10 C 0.083 3.917 11 N -0.894 5.894 12 Si 0.862 3.138 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.250 1.250 16 C -0.175 4.175 17 C -0.188 4.188 18 H 0.064 0.936 19 H 0.055 0.945 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 7.390 -5.215 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.168 4.168 3 C -0.180 4.180 4 C -0.200 4.200 5 S 0.020 5.980 6 C -0.193 4.193 7 C 0.010 3.990 8 C -0.512 4.512 9 H 0.096 0.904 10 C -0.119 4.119 11 N -0.532 5.532 12 Si 0.690 3.310 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.174 1.174 16 C -0.212 4.212 17 C -0.228 4.228 18 H 0.083 0.917 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.407 7.723 -4.483 12.265 hybrid contribution -1.150 -1.126 -1.878 2.473 sum -9.557 6.597 -6.361 13.241 Atomic orbital electron populations 1.22104 0.93744 1.02050 1.01984 1.22731 0.97761 0.98673 0.97630 1.21574 1.01787 0.92859 1.01755 1.22093 1.02308 0.99869 0.95739 1.87051 1.71042 1.10249 1.29658 1.23261 0.99330 0.94313 1.02423 1.19024 0.93934 0.95896 0.90162 1.20209 0.89574 1.30484 1.10893 0.90374 1.24858 0.94358 0.95705 0.97012 1.69887 1.07197 1.38842 1.37227 0.87091 0.81937 0.78942 0.83064 1.20629 1.21829 1.17419 1.22779 1.02470 0.99220 0.96772 1.23120 1.01034 0.93908 1.04752 0.91687 0.92613 0.92722 0.91742 0.92115 0.92015 0.92790 0.92659 0.91319 0.91361 0.92525 0.92648 0.89620 0.90782 0.91450 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.31 37.16 0.31 -1.58 16 2 C -0.06 -0.90 0.95 -90.62 -0.09 -0.99 16 3 C -0.12 -1.60 8.48 37.16 0.32 -1.29 16 4 C -0.14 -2.18 8.33 37.16 0.31 -1.87 16 5 S -0.21 -4.24 20.35 -107.50 -2.19 -6.43 16 6 C -0.05 -0.96 4.53 37.16 0.17 -0.79 16 7 C 0.01 0.28 0.79 -155.66 -0.12 0.16 16 8 C -0.47 -13.28 9.05 -34.44 -0.31 -13.59 16 9 H 0.08 2.43 8.06 -52.48 -0.42 2.00 16 10 C 0.08 2.39 5.47 -17.82 -0.10 2.29 16 11 N -0.89 -27.32 13.96 55.43 0.77 -26.55 16 12 Si 0.86 21.34 24.90 -169.99 -4.23 17.11 16 13 H -0.28 -6.82 7.05 56.52 0.40 -6.42 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.25 -5.81 5.76 56.52 0.33 -5.49 16 16 C -0.18 -3.62 9.96 -26.70 -0.27 -3.89 16 17 C -0.19 -3.99 8.10 -26.70 -0.22 -4.21 16 18 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 19 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.77 6.58 -51.93 -0.34 0.43 16 21 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.90 6.79 -51.93 -0.35 0.55 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.07 1.54 4.05 -51.92 -0.21 1.33 16 28 H 0.06 1.08 6.74 -51.93 -0.35 0.73 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 LS Contribution 273.17 15.07 4.12 4.12 Total: -1.00 -29.58 273.17 -7.07 -36.65 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.54 Total: 0.86 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 0.00 Total: -25.76 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.23 Total: 17.11 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.19 Total: -6.43 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.58 -7.07 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.417 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds