Wall clock time and date at job start Mon Mar 30 2020 02:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47177 * 2 1 4 4 C 1.53002 * 109.46863 * 240.00451 * 2 1 3 5 5 S 1.81401 * 109.47138 * 120.00368 * 2 1 3 6 6 C 1.81402 * 102.99936 * 59.99848 * 5 2 1 7 7 C 1.52998 * 109.46821 * 184.14696 * 6 5 2 8 8 C 1.50700 * 115.55421 * 294.75025 * 7 6 5 9 9 H 1.08005 * 120.00022 * 114.80345 * 8 7 6 10 10 C 1.37872 * 120.00144 * 294.53609 * 8 7 6 11 11 N 1.31509 * 120.00109 * 175.69747 * 10 8 7 12 12 Si 1.86802 * 119.99698 * 355.69379 * 10 8 7 13 13 H 1.48502 * 109.47178 * 93.72962 * 12 10 8 14 14 H 1.48506 * 109.46823 * 213.72554 * 12 10 8 15 15 H 1.48495 * 109.47218 * 333.72540 * 12 10 8 16 16 C 1.53001 * 117.49834 * 80.42465 * 7 6 5 17 17 C 1.53000 * 117.49802 * 149.07874 * 7 6 5 18 18 H 1.09000 * 109.46706 * 299.99213 * 1 2 3 19 19 H 1.08996 * 109.47175 * 59.99952 * 1 2 3 20 20 H 1.08998 * 109.46801 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47058 * 180.02562 * 3 2 1 22 22 H 1.08999 * 109.47400 * 300.00800 * 3 2 1 23 23 H 1.09003 * 109.46930 * 60.00305 * 3 2 1 24 24 H 1.09006 * 109.46877 * 299.99648 * 4 2 1 25 25 H 1.08996 * 109.47554 * 59.99829 * 4 2 1 26 26 H 1.08992 * 109.46924 * 180.02562 * 4 2 1 27 27 H 1.09006 * 109.46749 * 64.15184 * 6 5 2 28 28 H 1.08993 * 109.47461 * 304.15126 * 6 5 2 29 29 H 0.97001 * 120.00239 * 179.97438 * 11 10 8 30 30 H 1.09000 * 117.50137 * 215.00581 * 16 7 6 31 31 H 1.09000 * 117.49712 * 0.02562 * 16 7 6 32 32 H 1.09007 * 117.49984 * 359.97438 * 17 7 6 33 33 H 1.09005 * 117.50096 * 144.97160 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 2.1348 -0.8552 1.4811 6 6 1.4375 -2.5205 1.3039 7 6 1.7762 -3.3497 2.5443 8 6 3.2406 -3.6366 2.7545 9 1 3.7535 -3.2271 3.6122 10 6 3.9244 -4.4265 1.8548 11 7 5.2198 -4.6078 1.9908 12 14 3.0108 -5.2391 0.4425 13 1 3.0872 -4.3720 -0.7606 14 1 3.6304 -6.5553 0.1443 15 1 1.5885 -5.4360 0.8213 16 6 0.9108 -3.1444 3.7892 17 6 0.7772 -4.4287 2.9671 18 1 -0.3633 0.5137 0.8901 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9564 -0.8899 23 1 1.6768 1.9563 0.8900 24 1 1.6767 -1.7489 -1.2493 25 1 1.6767 -0.2074 -2.1393 26 1 3.1299 -0.7216 -1.2491 27 1 1.8600 -2.9991 0.4204 28 1 0.3550 -2.4517 1.1973 29 1 5.7009 -5.1638 1.3581 30 1 1.4007 -3.2168 4.7603 31 1 0.0999 -2.4189 3.7244 32 1 -0.1216 -4.5474 2.3619 33 1 1.1792 -5.3462 3.3969 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862435.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:44 Heat of formation + Delta-G solvation = -10.254989 kcal Electronic energy + Delta-G solvation = -12897.203737 eV Core-core repulsion = 10855.761669 eV Total energy + Delta-G solvation = -2041.442068 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.67955 -37.12407 -34.25128 -29.99409 -28.28808 -28.15264 -27.20842 -23.21236 -21.64231 -20.82871 -18.48192 -17.00584 -16.84045 -15.73415 -15.53419 -15.19666 -15.09066 -14.87182 -14.56870 -14.01570 -13.37453 -13.13611 -13.06027 -12.69793 -12.58010 -12.49624 -12.15693 -12.03093 -11.98146 -11.84118 -11.50042 -10.93107 -10.66727 -10.45719 -10.11023 -8.40858 -8.27081 -6.30865 0.90417 1.28957 1.35048 1.47396 1.92087 2.36091 3.03418 3.35812 3.82701 3.84163 4.00074 4.18510 4.22919 4.41648 4.46176 4.62556 4.68007 4.72755 4.80733 4.85972 4.89370 4.89783 4.92078 5.05878 5.12133 5.27325 5.31874 5.35060 5.49969 5.70260 6.31822 6.72896 7.35317 8.89318 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030202 B = 0.012172 C = 0.010818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.865137 B = 2299.778757 C = 2587.692691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.042 4.042 3 C -0.120 4.120 4 C -0.142 4.142 5 S -0.282 6.282 6 C -0.031 4.031 7 C -0.019 4.019 8 C -0.470 4.470 9 H 0.025 0.975 10 C 0.025 3.975 11 N -0.949 5.949 12 Si 0.923 3.077 13 H -0.274 1.274 14 H -0.296 1.296 15 H -0.220 1.220 16 C -0.161 4.161 17 C -0.175 4.175 18 H 0.067 0.933 19 H 0.085 0.915 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.094 0.906 23 H 0.063 0.937 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.264 0.736 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.413 8.148 -7.066 16.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.178 4.178 4 C -0.201 4.201 5 S -0.053 6.053 6 C -0.179 4.179 7 C -0.021 4.021 8 C -0.508 4.508 9 H 0.043 0.957 10 C -0.172 4.172 11 N -0.588 5.588 12 Si 0.748 3.252 13 H -0.201 1.201 14 H -0.223 1.223 15 H -0.142 1.142 16 C -0.198 4.198 17 C -0.215 4.215 18 H 0.087 0.913 19 H 0.104 0.896 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.113 0.887 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.612 8.487 -6.316 15.708 hybrid contribution -0.116 -1.239 -1.235 1.754 sum -11.728 7.247 -7.551 15.719 Atomic orbital electron populations 1.22075 0.91540 1.02226 1.03646 1.22877 0.99337 0.98736 0.94254 1.21604 1.01067 0.91637 1.03488 1.22096 1.01182 0.99601 0.97198 1.87251 1.72758 1.11133 1.34113 1.23036 1.00813 0.93786 1.00227 1.18948 0.91609 0.98655 0.92866 1.20300 0.92303 1.29364 1.08852 0.95702 1.25690 0.94958 0.96519 1.00022 1.70050 1.09263 1.40610 1.38924 0.86109 0.82106 0.77391 0.79584 1.20055 1.22293 1.14195 1.22807 1.02047 0.99712 0.95229 1.23156 1.00843 0.93184 1.04311 0.91348 0.89588 0.93268 0.93056 0.88749 0.91754 0.94167 0.89115 0.93237 0.92812 0.89607 0.92741 0.90770 0.87945 0.88180 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.31 71.98 0.60 -2.50 16 2 C -0.04 -1.20 0.95 -10.79 -0.01 -1.21 16 3 C -0.12 -2.83 8.48 71.98 0.61 -2.22 16 4 C -0.14 -4.02 8.33 71.98 0.60 -3.42 16 5 S -0.28 -11.23 20.35 -56.49 -1.15 -12.38 16 6 C -0.03 -1.25 4.53 71.98 0.33 -0.92 16 7 C -0.02 -0.87 0.79 -52.93 -0.04 -0.91 16 8 C -0.47 -27.20 9.05 25.60 0.23 -26.97 16 9 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 10 C 0.03 1.49 5.47 84.65 0.46 1.96 16 11 N -0.95 -60.50 13.96 21.44 0.30 -60.20 16 12 Si 0.92 44.09 24.90 68.60 1.71 45.80 16 13 H -0.27 -12.76 7.05 99.48 0.70 -12.06 16 14 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 15 H -0.22 -9.28 5.76 99.48 0.57 -8.71 16 16 C -0.16 -6.36 9.96 30.62 0.30 -6.05 16 17 C -0.18 -6.93 8.10 30.62 0.25 -6.68 16 18 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 19 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.05 1.18 6.58 -2.39 -0.02 1.16 16 21 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.04 1.24 6.79 -2.38 -0.02 1.22 16 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.32 4.05 -2.39 -0.01 2.31 16 28 H 0.09 2.95 6.74 -2.39 -0.02 2.94 16 29 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.07 3.07 8.14 -2.39 -0.02 3.06 16 31 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.10 3.33 8.14 -2.38 -0.02 3.32 16 33 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 Total: -1.00 -66.94 273.17 5.10 -61.84 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.92 Total: 13.88 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 3.33 Total: -48.93 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: 0.30 Total: -60.20 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.71 Total: 45.80 kcal Atomic # 16 Polarization: -11.23 SS G_CDS: -1.15 Total: -12.38 kcal Total: -66.94 5.10 -61.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862435.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.581 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds