Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99967 * 2 1 4 4 H 1.09001 * 110.45773 * 32.39096 * 3 2 1 5 5 C 1.54477 * 110.51036 * 269.64284 * 3 2 1 6 6 O 1.44428 * 104.80429 * 217.37487 * 5 3 2 7 7 C 1.44422 * 105.27193 * 40.51160 * 6 5 3 8 8 C 1.54482 * 104.80450 * 319.48814 * 7 6 5 9 9 H 1.09000 * 110.51056 * 265.33080 * 8 7 6 10 10 C 1.50695 * 110.50881 * 142.76198 * 8 7 6 11 11 O 1.21295 * 120.00673 * 327.30051 * 10 8 7 12 12 N 1.34786 * 119.99992 * 147.30375 * 10 8 7 13 13 C 1.37102 * 119.99918 * 179.97438 * 12 10 8 14 14 H 1.08001 * 119.99948 * 0.02562 * 13 12 10 15 15 C 1.38944 * 119.99645 * 179.97438 * 13 12 10 16 16 N 1.31417 * 120.00051 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00030 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46939 * 90.00230 * 17 15 13 19 19 H 1.48496 * 109.47269 * 210.00634 * 17 15 13 20 20 H 1.48501 * 109.46816 * 330.00378 * 17 15 13 21 21 H 1.08999 * 109.47290 * 60.00059 * 1 2 3 22 22 H 1.08995 * 109.47126 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47053 * 300.00122 * 1 2 3 24 24 H 1.00894 * 111.00146 * 236.05222 * 2 1 3 25 25 H 1.09001 * 110.37452 * 336.21106 * 5 3 2 26 26 H 1.09006 * 110.37364 * 98.54141 * 5 3 2 27 27 H 1.09000 * 110.37008 * 200.65557 * 7 6 5 28 28 H 1.09001 * 110.37129 * 78.32170 * 7 6 5 29 29 H 0.96998 * 119.99548 * 0.02562 * 12 10 8 30 30 H 0.97004 * 119.99833 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3269 2.0362 0.5471 5 6 2.1978 1.8736 -1.4468 6 8 3.4076 2.6609 -1.3984 7 6 4.3054 1.9263 -0.5381 8 6 3.4138 1.4070 0.6116 9 1 3.4472 2.0910 1.4596 10 6 3.8455 0.0257 1.0318 11 8 4.3021 -0.7428 0.2120 12 7 3.7241 -0.3560 2.3188 13 6 4.1163 -1.6128 2.7010 14 1 4.5229 -2.2970 1.9710 15 6 3.9916 -2.0060 4.0279 16 7 3.4973 -1.1733 4.9163 17 14 4.5253 -3.7187 4.5486 18 1 5.9547 -3.6910 4.9504 19 1 3.6971 -4.1677 5.6965 20 1 4.3485 -4.6590 3.4129 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8306 -0.5260 -0.7814 25 1 2.3204 1.0309 -2.1273 26 1 1.3548 2.4919 -1.7554 27 1 5.0815 2.5850 -0.1486 28 1 4.7513 1.0917 -1.0792 29 1 3.3585 0.2584 2.9744 30 1 3.4099 -1.4479 5.8425 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085380960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = -102.416001 kcal Electronic energy + Delta-G solvation = -14866.060043 eV Core-core repulsion = 12274.328359 eV Total energy + Delta-G solvation = -2591.731684 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.24204 -39.08818 -36.41134 -35.84473 -33.21642 -32.05449 -29.53975 -27.08192 -25.59991 -24.12312 -22.79258 -20.47839 -19.69508 -18.03156 -17.75502 -16.81823 -16.59200 -16.08596 -15.60114 -15.43838 -15.13880 -14.89453 -14.17407 -14.08843 -13.54788 -13.07411 -12.93513 -12.84796 -12.61707 -12.34266 -12.11661 -12.09789 -11.93214 -11.41031 -10.88592 -10.20932 -9.90022 -9.28757 -8.38864 -5.85048 1.40371 1.43119 1.55752 2.15348 2.33863 2.80020 3.25490 3.31695 3.38643 3.70812 3.83875 4.08210 4.17582 4.27443 4.52948 4.59242 4.59377 4.75027 4.77792 4.81186 4.91533 5.03416 5.47917 5.64653 6.05025 6.14690 6.36674 6.68778 7.21704 7.69181 8.23656 8.79043 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.041984 B = 0.008698 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.764417 B = 3218.286407 C = 3491.492510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.699 5.699 3 C 0.076 3.924 4 H 0.112 0.888 5 C 0.025 3.975 6 O -0.381 6.381 7 C 0.063 3.937 8 C -0.134 4.134 9 H 0.105 0.895 10 C 0.487 3.513 11 O -0.633 6.633 12 N -0.564 5.564 13 C -0.320 4.320 14 H 0.077 0.923 15 C -0.017 4.017 16 N -0.924 5.924 17 Si 0.989 3.011 18 H -0.272 1.272 19 H -0.274 1.274 20 H -0.274 1.274 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.343 0.657 25 H 0.056 0.944 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.057 0.943 29 H 0.391 0.609 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 6.309 -7.003 10.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.330 5.330 3 C -0.036 4.036 4 H 0.130 0.870 5 C -0.054 4.054 6 O -0.299 6.299 7 C -0.014 4.014 8 C -0.157 4.157 9 H 0.124 0.876 10 C 0.274 3.726 11 O -0.521 6.521 12 N -0.199 5.199 13 C -0.450 4.450 14 H 0.095 0.905 15 C -0.215 4.215 16 N -0.566 5.566 17 Si 0.814 3.186 18 H -0.198 1.198 19 H -0.199 1.199 20 H -0.199 1.199 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.162 0.838 25 H 0.074 0.926 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.225 0.775 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.119 5.896 -6.751 10.321 hybrid contribution -0.105 -0.576 0.025 0.586 sum -5.224 5.320 -6.726 10.041 Atomic orbital electron populations 1.22229 0.86040 1.02256 1.01024 1.60266 1.09196 1.12481 1.51103 1.22919 0.94356 0.90599 0.95700 0.86970 1.24287 0.88601 0.96199 0.96305 1.89054 1.26222 1.45770 1.68875 1.23319 0.92722 0.96120 0.89227 1.22661 0.97309 0.95162 1.00524 0.87646 1.19779 0.81500 0.89203 0.82108 1.90443 1.52631 1.56593 1.52406 1.41797 1.55880 1.14139 1.08051 1.19608 1.39603 0.91860 0.93902 0.90461 1.25972 0.97234 1.03096 0.95235 1.69691 1.46023 1.37390 1.03456 0.84979 0.78254 0.77658 0.77737 1.19798 1.19860 1.19858 0.93903 0.91687 0.91609 0.83773 0.92572 0.86261 0.87203 0.92457 0.77541 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 10.56 127.69 1.35 2.19 16 2 N -0.70 -23.06 5.16 -509.34 -2.63 -25.69 16 3 C 0.08 2.24 3.42 45.93 0.16 2.40 16 4 H 0.11 2.86 7.82 -2.39 -0.02 2.84 16 5 C 0.02 0.64 7.31 72.48 0.53 1.17 16 6 O -0.38 -11.57 11.65 -148.98 -1.74 -13.30 16 7 C 0.06 2.07 7.14 72.49 0.52 2.59 16 8 C -0.13 -4.73 3.50 -10.53 -0.04 -4.76 16 9 H 0.11 3.37 8.13 -2.39 -0.02 3.35 16 10 C 0.49 22.96 5.54 87.65 0.49 23.44 16 11 O -0.63 -34.10 15.22 -3.08 -0.05 -34.15 16 12 N -0.56 -29.31 5.29 -306.98 -1.62 -30.93 16 13 C -0.32 -18.32 9.68 84.04 0.81 -17.50 16 14 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 15 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 16 N -0.92 -50.88 13.05 21.66 0.28 -50.59 16 17 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 24 H 0.34 11.94 8.00 -89.70 -0.72 11.22 16 25 H 0.06 1.51 7.55 -2.39 -0.02 1.50 16 26 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 27 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.06 2.16 6.96 -2.39 -0.02 2.14 16 29 H 0.39 19.85 7.89 -92.71 -0.73 19.12 16 30 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.56 256.35 0.27 -65.29 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.29 Total: 34.53 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.28 Total: 9.09 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -3.97 Total: -107.21 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.78 Total: -47.45 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.56 0.27 -65.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085380960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.126 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds