Wall clock time and date at job start Mon Mar 30 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47246 * 2 1 4 4 C 1.53002 * 109.47492 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47522 * 304.97666 * 4 3 2 6 6 C 1.53097 * 109.49239 * 185.03665 * 4 3 2 7 7 C 1.53186 * 109.15624 * 182.48897 * 6 4 3 8 8 O 1.42895 * 109.54383 * 296.93505 * 7 6 4 9 9 C 1.50699 * 109.54173 * 176.75855 * 7 6 4 10 10 H 1.08002 * 120.00516 * 0.17372 * 9 7 6 11 11 C 1.37884 * 119.99783 * 180.17672 * 9 7 6 12 12 N 1.31514 * 119.99707 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99956 * 180.27458 * 11 9 7 14 14 H 1.48497 * 109.47172 * 179.72730 * 13 11 9 15 15 H 1.48506 * 109.47132 * 299.72429 * 13 11 9 16 16 H 1.48501 * 109.47173 * 59.72550 * 13 11 9 17 17 C 1.53182 * 109.10748 * 56.84697 * 7 6 4 18 18 C 1.53093 * 109.16158 * 303.06606 * 17 7 6 19 19 O 1.42901 * 109.41816 * 57.61026 * 18 17 7 20 20 H 1.08999 * 109.47699 * 300.00299 * 1 2 3 21 21 H 1.09005 * 109.47157 * 60.00329 * 1 2 3 22 22 H 1.09003 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47699 * 239.99701 * 2 1 3 24 24 H 1.09005 * 109.47157 * 119.99671 * 2 1 3 25 25 H 1.09000 * 109.47489 * 59.99522 * 3 2 1 26 26 H 1.09005 * 109.46774 * 299.99905 * 3 2 1 27 27 H 1.08996 * 109.60103 * 62.54478 * 6 4 3 28 28 H 1.09005 * 109.45759 * 302.34767 * 6 4 3 29 29 H 0.96694 * 114.00449 * 179.82279 * 8 7 6 30 30 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 31 31 H 1.08998 * 109.51868 * 62.96781 * 17 7 6 32 32 H 1.09001 * 109.51902 * 183.15621 * 17 7 6 33 33 H 1.09000 * 109.47744 * 177.59637 * 18 17 7 34 34 H 1.09000 * 109.47901 * 297.61098 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9331 0.8536 0.8429 6 6 4.0807 2.8802 0.1274 7 6 5.6113 2.8773 0.0646 8 8 6.1339 2.1471 1.1763 9 6 6.1203 4.2951 0.1086 10 1 5.4234 5.1172 0.1775 11 6 7.4759 4.5426 0.0608 12 7 8.3246 3.5415 -0.0237 13 14 8.1072 6.2996 0.1230 14 1 9.5910 6.2948 0.0632 15 1 7.5677 7.0606 -1.0325 16 1 7.6649 6.9400 1.3876 17 6 6.0584 2.2125 -1.2410 18 6 5.4712 0.8005 -1.3126 19 8 4.0471 0.8729 -1.2200 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9564 0.8899 26 1 1.6766 1.9563 -0.8901 27 1 3.7560 3.3011 1.0789 28 1 3.6838 3.4801 -0.6917 29 1 7.0995 2.1023 1.1985 30 1 9.2782 3.7157 -0.0577 31 1 5.7025 2.7984 -2.0884 32 1 7.1467 2.1564 -1.2670 33 1 5.7510 0.3382 -2.2592 34 1 5.8594 0.2031 -0.4877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:02 Heat of formation + Delta-G solvation = -125.759724 kcal Electronic energy + Delta-G solvation = -15306.287869 eV Core-core repulsion = 12817.084268 eV Total energy + Delta-G solvation = -2489.203601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.81494 -35.61308 -34.38225 -32.09914 -30.87137 -30.12061 -26.86867 -25.33389 -22.41365 -21.87013 -20.48319 -18.83911 -16.89285 -15.76669 -15.09464 -15.01534 -14.36164 -14.16476 -13.87586 -13.34882 -12.99039 -12.55549 -12.15806 -11.96571 -11.63144 -11.36062 -10.99800 -10.97176 -10.93874 -10.54434 -10.38078 -10.34413 -10.22318 -9.92475 -9.65607 -9.24292 -8.64814 -8.55843 -7.91135 -6.16129 -4.27425 3.24375 3.29036 3.32277 4.31352 4.56246 5.07130 5.12950 5.28702 5.39850 5.77842 5.86674 5.89434 6.03438 6.08062 6.10204 6.18887 6.24620 6.29705 6.38531 6.43673 6.56697 6.63508 6.66170 6.83286 6.98491 7.23171 7.55827 7.65071 7.89855 8.14571 8.18289 8.74630 9.40553 9.54082 10.86319 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054625 B = 0.007995 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.460095 B = 3501.377551 C = 3738.144252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.094 3.906 5 H 0.056 0.944 6 C -0.124 4.124 7 C 0.250 3.750 8 O -0.593 6.593 9 C -0.534 4.534 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.900 3.100 14 H -0.286 1.286 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.169 4.169 18 C 0.064 3.936 19 O -0.393 6.393 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.379 0.621 30 H 0.267 0.733 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.772 -4.661 -0.750 9.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.037 3.963 5 H 0.074 0.926 6 C -0.162 4.162 7 C 0.211 3.789 8 O -0.402 6.402 9 C -0.572 4.572 10 H 0.077 0.923 11 C -0.132 4.132 12 N -0.542 5.542 13 Si 0.727 3.273 14 H -0.211 1.211 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.208 4.208 18 C -0.012 4.012 19 O -0.312 6.312 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.341 -4.823 -0.765 9.665 hybrid contribution 1.314 1.233 0.007 1.802 sum -7.027 -3.589 -0.759 7.927 Atomic orbital electron populations 1.21786 0.96539 1.01017 1.01465 1.21481 0.94871 0.97317 1.02264 1.21655 0.94309 0.96813 1.02069 1.22039 0.92641 0.94621 0.87014 0.92559 1.22106 0.97448 0.95374 1.01252 1.18589 0.88005 0.89594 0.82720 1.86087 1.27136 1.77073 1.49918 1.21734 0.92132 0.92894 1.50444 0.92337 1.25005 0.96775 0.97661 0.93784 1.69581 1.02805 1.30720 1.51061 0.86530 0.77535 0.84449 0.78738 1.21143 1.20194 1.20132 1.22784 1.03887 0.93930 1.00163 1.22580 0.80366 0.98456 0.99821 1.87728 1.21942 1.82622 1.38952 0.93065 0.92944 0.93224 0.91401 0.92454 0.91213 0.91651 0.92062 0.91712 0.77044 0.92295 0.93114 0.88304 0.91033 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.15 0.37 -1.35 16 2 C -0.12 -1.70 5.83 -26.73 -0.16 -1.86 16 3 C -0.11 -1.76 4.92 -26.73 -0.13 -1.89 16 4 C 0.09 1.86 2.49 -26.68 -0.07 1.79 16 5 H 0.06 1.17 7.82 -51.93 -0.41 0.77 16 6 C -0.12 -2.75 4.38 -26.58 -0.12 -2.86 16 7 C 0.25 6.29 0.67 -91.58 -0.06 6.22 16 8 O -0.59 -15.39 11.93 -35.23 -0.42 -15.81 16 9 C -0.53 -14.54 8.25 -34.44 -0.28 -14.82 16 10 H 0.06 1.59 7.75 -52.49 -0.41 1.18 16 11 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 12 N -0.90 -24.05 9.74 55.43 0.54 -23.51 16 13 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.17 -4.03 4.85 -26.59 -0.13 -4.16 16 18 C 0.06 1.34 6.69 37.21 0.25 1.58 16 19 O -0.39 -8.12 9.94 -35.23 -0.35 -8.47 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.38 10.04 7.16 45.56 0.33 10.36 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 2.52 6.19 -51.93 -0.32 2.20 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.04 0.92 7.82 -51.93 -0.41 0.51 16 LS Contribution 269.99 15.07 4.07 4.07 Total: -1.00 -27.35 269.99 -6.59 -33.93 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -4.98 Total: 9.56 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -0.42 Total: -15.60 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.54 Total: -23.51 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.77 Total: -24.27 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.35 -6.59 -33.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.828 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds