Wall clock time and date at job start Mon Mar 30 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47246 * 2 1 4 4 C 1.53002 * 109.47492 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47522 * 304.97666 * 4 3 2 6 6 C 1.53097 * 109.49239 * 185.03665 * 4 3 2 7 7 C 1.53186 * 109.15624 * 182.48897 * 6 4 3 8 8 O 1.42895 * 109.54383 * 296.93505 * 7 6 4 9 9 C 1.50699 * 109.54173 * 176.75855 * 7 6 4 10 10 H 1.08002 * 120.00516 * 0.17372 * 9 7 6 11 11 C 1.37884 * 119.99783 * 180.17672 * 9 7 6 12 12 N 1.31514 * 119.99707 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 119.99956 * 180.27458 * 11 9 7 14 14 H 1.48497 * 109.47172 * 179.72730 * 13 11 9 15 15 H 1.48506 * 109.47132 * 299.72429 * 13 11 9 16 16 H 1.48501 * 109.47173 * 59.72550 * 13 11 9 17 17 C 1.53182 * 109.10748 * 56.84697 * 7 6 4 18 18 C 1.53093 * 109.16158 * 303.06606 * 17 7 6 19 19 O 1.42901 * 109.41816 * 57.61026 * 18 17 7 20 20 H 1.08999 * 109.47699 * 300.00299 * 1 2 3 21 21 H 1.09005 * 109.47157 * 60.00329 * 1 2 3 22 22 H 1.09003 * 109.46998 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47699 * 239.99701 * 2 1 3 24 24 H 1.09005 * 109.47157 * 119.99671 * 2 1 3 25 25 H 1.09000 * 109.47489 * 59.99522 * 3 2 1 26 26 H 1.09005 * 109.46774 * 299.99905 * 3 2 1 27 27 H 1.08996 * 109.60103 * 62.54478 * 6 4 3 28 28 H 1.09005 * 109.45759 * 302.34767 * 6 4 3 29 29 H 0.96694 * 114.00449 * 179.82279 * 8 7 6 30 30 H 0.97005 * 119.99656 * 179.97438 * 12 11 9 31 31 H 1.08998 * 109.51868 * 62.96781 * 17 7 6 32 32 H 1.09001 * 109.51902 * 183.15621 * 17 7 6 33 33 H 1.09000 * 109.47744 * 177.59637 * 18 17 7 34 34 H 1.09000 * 109.47901 * 297.61098 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9331 0.8536 0.8429 6 6 4.0807 2.8802 0.1274 7 6 5.6113 2.8773 0.0646 8 8 6.1339 2.1471 1.1763 9 6 6.1203 4.2951 0.1086 10 1 5.4234 5.1172 0.1775 11 6 7.4759 4.5426 0.0608 12 7 8.3246 3.5415 -0.0237 13 14 8.1072 6.2996 0.1230 14 1 9.5910 6.2948 0.0632 15 1 7.5677 7.0606 -1.0325 16 1 7.6649 6.9400 1.3876 17 6 6.0584 2.2125 -1.2410 18 6 5.4712 0.8005 -1.3126 19 8 4.0471 0.8729 -1.2200 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6766 1.9564 0.8899 26 1 1.6766 1.9563 -0.8901 27 1 3.7560 3.3011 1.0789 28 1 3.6838 3.4801 -0.6917 29 1 7.0995 2.1023 1.1985 30 1 9.2782 3.7157 -0.0577 31 1 5.7025 2.7984 -2.0884 32 1 7.1467 2.1564 -1.2670 33 1 5.7510 0.3382 -2.2592 34 1 5.8594 0.2031 -0.4877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:02 Heat of formation + Delta-G solvation = -143.232418 kcal Electronic energy + Delta-G solvation = -15307.045541 eV Core-core repulsion = 12817.084268 eV Total energy + Delta-G solvation = -2489.961274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54894 -37.42733 -35.70743 -34.16135 -32.57359 -31.80828 -28.52394 -27.02324 -24.21655 -23.33021 -21.81164 -20.69072 -18.90837 -17.32067 -17.01604 -16.84270 -16.06647 -15.60179 -15.35981 -15.15370 -14.57057 -14.08703 -13.67275 -13.51005 -13.33770 -12.86405 -12.82010 -12.65089 -12.36254 -12.18686 -12.13603 -11.96576 -11.74090 -11.53084 -11.42173 -10.93322 -10.61211 -10.44486 -9.85634 -8.18209 -6.38163 1.39894 1.40685 1.48530 2.37322 2.97740 3.01764 3.85316 4.02290 4.18121 4.27014 4.34333 4.42149 4.46289 4.57830 4.65109 4.72915 4.86325 4.88458 4.92023 5.06385 5.09721 5.18404 5.28674 5.39311 5.40849 5.54136 5.54722 5.70084 5.93949 6.15769 6.44573 6.66565 7.32753 7.45147 8.81544 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054625 B = 0.007995 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.460095 B = 3501.377551 C = 3738.144252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.106 4.106 4 C 0.097 3.903 5 H 0.044 0.956 6 C -0.122 4.122 7 C 0.236 3.764 8 O -0.597 6.597 9 C -0.565 4.565 10 H 0.050 0.950 11 C 0.029 3.971 12 N -0.912 5.912 13 Si 0.959 3.041 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.276 1.276 17 C -0.162 4.162 18 C 0.070 3.930 19 O -0.392 6.392 20 H 0.059 0.941 21 H 0.055 0.945 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.374 0.626 30 H 0.270 0.730 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 -4.764 -0.912 9.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.143 4.143 4 C 0.040 3.960 5 H 0.062 0.938 6 C -0.160 4.160 7 C 0.196 3.804 8 O -0.405 6.405 9 C -0.603 4.603 10 H 0.068 0.932 11 C -0.170 4.170 12 N -0.553 5.553 13 Si 0.784 3.216 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.201 1.201 17 C -0.200 4.200 18 C -0.007 4.007 19 O -0.312 6.312 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.082 0.918 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.223 0.777 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.261 -4.935 -0.930 10.535 hybrid contribution 1.625 1.271 0.071 2.064 sum -7.636 -3.664 -0.859 8.513 Atomic orbital electron populations 1.21743 0.94302 1.02190 1.02103 1.21446 0.96803 0.95621 1.01789 1.21654 0.91195 0.98550 1.02898 1.22096 0.95158 0.92501 0.86289 0.93793 1.22074 0.95563 0.97226 1.01091 1.18820 0.89755 0.88842 0.82934 1.86082 1.26640 1.77226 1.50600 1.22016 0.92718 0.93822 1.51744 0.93197 1.25681 0.96852 1.01236 0.93273 1.69668 1.02975 1.32073 1.50563 0.85608 0.77199 0.80182 0.78581 1.20358 1.19876 1.20094 1.22623 1.02708 0.95632 0.99074 1.22537 0.80476 0.96510 1.01143 1.87745 1.21564 1.82469 1.39391 0.92198 0.92559 0.91844 0.92435 0.92436 0.89837 0.91350 0.92283 0.91753 0.77712 0.92073 0.94137 0.90237 0.88359 0.94217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.91 71.98 0.71 -2.20 16 2 C -0.12 -3.07 5.83 30.59 0.18 -2.89 16 3 C -0.11 -3.16 4.92 30.59 0.15 -3.01 16 4 C 0.10 3.74 2.49 30.63 0.08 3.81 16 5 H 0.04 1.81 7.82 -2.39 -0.02 1.79 16 6 C -0.12 -5.37 4.38 30.69 0.13 -5.24 16 7 C 0.24 11.93 0.67 -11.42 -0.01 11.92 16 8 O -0.60 -31.33 11.93 -148.98 -1.78 -33.11 16 9 C -0.57 -31.06 8.25 25.60 0.21 -30.85 16 10 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 11 C 0.03 1.57 5.22 84.66 0.44 2.01 16 12 N -0.91 -48.85 9.74 21.45 0.21 -48.64 16 13 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 14 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 C -0.16 -7.73 4.85 30.69 0.15 -7.59 16 18 C 0.07 2.85 6.69 72.01 0.48 3.33 16 19 O -0.39 -15.72 9.94 -148.98 -1.48 -17.20 16 20 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.60 7.82 -2.39 -0.02 1.58 16 24 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16 29 H 0.37 20.13 7.16 -74.06 -0.53 19.60 16 30 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 4.10 6.19 -2.39 -0.01 4.08 16 33 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 34 H 0.04 1.65 7.82 -2.39 -0.02 1.63 16 Total: -1.00 -57.01 269.99 2.04 -54.97 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.53 Total: 30.07 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 2.53 Total: -30.70 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.21 Total: -48.64 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -3.26 Total: -50.31 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -57.01 2.04 -54.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.263 kcal (2) G-P(sol) polarization free energy of solvation -57.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds