Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46706 * 2 1 4 4 C 1.53006 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.49087 * 305.02763 * 4 3 2 6 6 C 1.53098 * 109.47785 * 184.99768 * 4 3 2 7 7 C 1.53172 * 109.15930 * 182.41064 * 6 4 3 8 8 O 1.42903 * 109.54245 * 176.85171 * 7 6 4 9 9 C 1.50698 * 109.54571 * 297.02295 * 7 6 4 10 10 H 1.07999 * 120.00060 * 359.82409 * 9 7 6 11 11 C 1.37882 * 120.00376 * 179.82576 * 9 7 6 12 12 N 1.31512 * 119.99465 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00119 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47146 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47024 * 120.00214 * 13 11 9 16 16 H 1.48499 * 109.46880 * 240.00018 * 13 11 9 17 17 C 1.53178 * 109.04048 * 56.98264 * 7 6 4 18 18 C 1.53092 * 109.16061 * 303.01440 * 17 7 6 19 19 O 1.42901 * 109.48131 * 65.05924 * 4 3 2 20 20 H 1.09002 * 109.46919 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47515 * 300.00154 * 1 2 3 22 22 H 1.09001 * 109.47409 * 60.00844 * 1 2 3 23 23 H 1.08994 * 109.47684 * 239.99541 * 2 1 3 24 24 H 1.09003 * 109.46867 * 119.99685 * 2 1 3 25 25 H 1.08999 * 109.47552 * 60.00117 * 3 2 1 26 26 H 1.08998 * 109.46777 * 299.99264 * 3 2 1 27 27 H 1.09000 * 109.51619 * 62.50504 * 6 4 3 28 28 H 1.09002 * 109.57453 * 302.34805 * 6 4 3 29 29 H 0.96700 * 114.00311 * 180.02562 * 8 7 6 30 30 H 0.96999 * 119.99877 * 179.97438 * 12 11 9 31 31 H 1.08997 * 109.51789 * 62.92256 * 17 7 6 32 32 H 1.08999 * 109.52304 * 183.11058 * 17 7 6 33 33 H 1.08998 * 109.48306 * 297.62826 * 18 17 7 34 34 H 1.09003 * 109.48893 * 177.59188 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9332 0.8530 0.8423 6 6 4.0804 2.8805 0.1264 7 6 5.6109 2.8777 0.0657 8 8 6.0934 4.2221 0.1087 9 6 6.1606 2.1073 1.2384 10 1 5.4870 1.6656 1.9579 11 6 7.5234 1.9661 1.3929 12 7 8.3436 2.5044 0.5171 13 14 8.2047 1.0105 2.8462 14 1 7.0820 0.5086 3.6787 15 1 9.0056 -0.1381 2.3517 16 1 9.0680 1.9008 3.6631 17 6 6.0580 2.2143 -1.2406 18 6 5.4712 0.8022 -1.3135 19 8 4.0470 0.8743 -1.2206 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.7542 3.3008 1.0777 28 1 3.6844 3.4815 -0.6923 29 1 7.0570 4.2955 0.0735 30 1 9.3024 2.4055 0.6259 31 1 5.7020 2.8010 -2.0874 32 1 7.1462 2.1584 -1.2668 33 1 5.8594 0.2042 -0.4890 34 1 5.7508 0.3406 -2.2605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = -124.691501 kcal Electronic energy + Delta-G solvation = -15450.109531 eV Core-core repulsion = 12960.952252 eV Total energy + Delta-G solvation = -2489.157279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.80280 -35.63273 -34.36776 -32.13896 -30.89484 -30.09622 -26.59286 -25.23276 -22.57256 -21.88153 -20.46036 -18.98409 -16.61172 -15.70570 -15.32311 -15.06067 -14.26248 -14.02606 -13.84290 -13.27374 -12.82965 -12.70544 -12.16730 -11.92409 -11.69408 -11.55192 -10.99790 -10.94355 -10.70492 -10.53813 -10.37917 -10.30624 -10.17832 -10.07057 -9.52299 -9.05933 -8.71863 -8.42062 -8.01729 -6.19175 -4.29989 3.19013 3.28259 3.32126 4.28832 4.62752 5.00295 5.16429 5.31720 5.42810 5.77312 5.85147 5.95217 6.06576 6.09179 6.17228 6.25686 6.29001 6.37982 6.49521 6.53092 6.58041 6.63536 6.77142 6.95392 7.08551 7.22182 7.40627 7.55201 7.88993 8.18797 8.22638 8.72765 9.38171 9.54832 10.83809 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.009976 C = 0.009003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.037273 B = 2805.974636 C = 3109.176571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.103 3.897 5 H 0.063 0.937 6 C -0.125 4.125 7 C 0.248 3.752 8 O -0.594 6.594 9 C -0.530 4.530 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.898 5.898 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.171 4.171 18 C 0.078 3.922 19 O -0.394 6.394 20 H 0.049 0.951 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.380 0.620 30 H 0.266 0.734 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.762 -3.736 -1.250 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.046 3.954 5 H 0.080 0.920 6 C -0.163 4.163 7 C 0.208 3.792 8 O -0.403 6.403 9 C -0.568 4.568 10 H 0.078 0.922 11 C -0.133 4.133 12 N -0.539 5.539 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.210 4.210 18 C 0.001 3.999 19 O -0.314 6.314 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.230 0.770 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.341 -3.652 -1.394 9.212 hybrid contribution 1.387 -0.509 0.933 1.747 sum -6.954 -4.161 -0.461 8.118 Atomic orbital electron populations 1.21784 0.96573 1.01007 1.01417 1.21479 0.94820 0.97268 1.02390 1.21652 0.94341 0.96850 1.02000 1.21946 0.92366 0.93642 0.87489 0.91951 1.22019 0.97633 0.95925 1.00734 1.18634 0.88360 0.80505 0.91674 1.86101 1.27897 1.29142 1.97171 1.21796 0.91915 1.33459 1.09672 0.92167 1.25004 0.96958 0.95103 0.96200 1.69593 1.03465 1.45600 1.35277 0.86478 0.79045 0.79657 0.82509 1.19683 1.20859 1.20796 1.22757 1.04240 0.95535 0.98426 1.22400 0.79753 0.97672 1.00030 1.87698 1.22287 1.82677 1.38759 0.93227 0.93093 0.92976 0.91326 0.92352 0.91233 0.91752 0.92133 0.93257 0.76973 0.92352 0.94949 0.88135 0.92624 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.74 5.83 -26.73 -0.16 -1.90 16 3 C -0.11 -1.79 4.92 -26.73 -0.13 -1.92 16 4 C 0.10 2.07 2.41 -26.68 -0.06 2.00 16 5 H 0.06 1.32 6.87 -51.93 -0.36 0.97 16 6 C -0.13 -2.81 4.53 -26.59 -0.12 -2.93 16 7 C 0.25 6.27 0.85 -91.59 -0.08 6.19 16 8 O -0.59 -15.98 12.97 -35.23 -0.46 -16.44 16 9 C -0.53 -14.03 6.51 -34.44 -0.22 -14.26 16 10 H 0.06 1.60 6.92 -52.49 -0.36 1.23 16 11 C 0.07 1.79 5.22 -17.82 -0.09 1.70 16 12 N -0.90 -23.76 9.69 55.43 0.54 -23.22 16 13 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.17 -4.11 5.09 -26.59 -0.14 -4.24 16 18 C 0.08 1.68 6.62 37.20 0.25 1.93 16 19 O -0.39 -8.30 9.94 -35.23 -0.35 -8.65 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.38 10.26 7.15 45.56 0.33 10.59 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 2.58 6.04 -51.93 -0.31 2.27 16 33 H 0.06 1.27 7.38 -51.93 -0.38 0.88 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 267.27 15.07 4.03 4.03 Total: -1.00 -27.24 267.27 -6.51 -33.76 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.86 Total: 9.82 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -0.39 Total: -14.80 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.54 Total: -23.22 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.81 Total: -25.10 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.24 -6.51 -33.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.936 kcal (2) G-P(sol) polarization free energy of solvation -27.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds