Wall clock time and date at job start Mon Mar 30 2020 02:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46706 * 2 1 4 4 C 1.53006 * 109.46719 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.49087 * 305.02763 * 4 3 2 6 6 C 1.53098 * 109.47785 * 184.99768 * 4 3 2 7 7 C 1.53172 * 109.15930 * 182.41064 * 6 4 3 8 8 O 1.42903 * 109.54245 * 176.85171 * 7 6 4 9 9 C 1.50698 * 109.54571 * 297.02295 * 7 6 4 10 10 H 1.07999 * 120.00060 * 359.82409 * 9 7 6 11 11 C 1.37882 * 120.00376 * 179.82576 * 9 7 6 12 12 N 1.31512 * 119.99465 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00119 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47146 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47024 * 120.00214 * 13 11 9 16 16 H 1.48499 * 109.46880 * 240.00018 * 13 11 9 17 17 C 1.53178 * 109.04048 * 56.98264 * 7 6 4 18 18 C 1.53092 * 109.16061 * 303.01440 * 17 7 6 19 19 O 1.42901 * 109.48131 * 65.05924 * 4 3 2 20 20 H 1.09002 * 109.46919 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47515 * 300.00154 * 1 2 3 22 22 H 1.09001 * 109.47409 * 60.00844 * 1 2 3 23 23 H 1.08994 * 109.47684 * 239.99541 * 2 1 3 24 24 H 1.09003 * 109.46867 * 119.99685 * 2 1 3 25 25 H 1.08999 * 109.47552 * 60.00117 * 3 2 1 26 26 H 1.08998 * 109.46777 * 299.99264 * 3 2 1 27 27 H 1.09000 * 109.51619 * 62.50504 * 6 4 3 28 28 H 1.09002 * 109.57453 * 302.34805 * 6 4 3 29 29 H 0.96700 * 114.00311 * 180.02562 * 8 7 6 30 30 H 0.96999 * 119.99877 * 179.97438 * 12 11 9 31 31 H 1.08997 * 109.51789 * 62.92256 * 17 7 6 32 32 H 1.08999 * 109.52304 * 183.11058 * 17 7 6 33 33 H 1.08998 * 109.48306 * 297.62826 * 18 17 7 34 34 H 1.09003 * 109.48893 * 177.59188 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9332 0.8530 0.8423 6 6 4.0804 2.8805 0.1264 7 6 5.6109 2.8777 0.0657 8 8 6.0934 4.2221 0.1087 9 6 6.1606 2.1073 1.2384 10 1 5.4870 1.6656 1.9579 11 6 7.5234 1.9661 1.3929 12 7 8.3436 2.5044 0.5171 13 14 8.2047 1.0105 2.8462 14 1 7.0820 0.5086 3.6787 15 1 9.0056 -0.1381 2.3517 16 1 9.0680 1.9008 3.6631 17 6 6.0580 2.2143 -1.2406 18 6 5.4712 0.8022 -1.3135 19 8 4.0470 0.8743 -1.2206 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8932 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.7542 3.3008 1.0777 28 1 3.6844 3.4815 -0.6923 29 1 7.0570 4.2955 0.0735 30 1 9.3024 2.4055 0.6259 31 1 5.7020 2.8010 -2.0874 32 1 7.1462 2.1584 -1.2668 33 1 5.8594 0.2042 -0.4890 34 1 5.7508 0.3406 -2.2605 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:05 Heat of formation + Delta-G solvation = -142.276030 kcal Electronic energy + Delta-G solvation = -15450.872054 eV Core-core repulsion = 12960.952252 eV Total energy + Delta-G solvation = -2489.919801 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.56060 -37.48969 -35.71203 -34.18261 -32.63405 -31.78417 -28.16988 -27.04907 -24.37084 -23.36260 -21.79874 -20.86870 -18.62298 -17.28446 -17.19124 -16.94924 -15.87465 -15.63493 -15.32947 -15.06273 -14.53467 -14.17530 -13.70029 -13.57439 -13.45809 -12.91490 -12.77688 -12.50467 -12.35546 -12.24325 -12.07492 -12.01857 -11.74840 -11.48602 -11.24069 -10.89806 -10.66190 -10.24623 -10.04206 -8.18854 -6.36621 1.37006 1.41315 1.50816 2.37024 2.99244 3.03479 3.70814 4.13416 4.21721 4.24339 4.41317 4.45258 4.48710 4.59292 4.66917 4.79289 4.86991 4.91529 5.01762 5.06567 5.17862 5.20541 5.28828 5.36399 5.42215 5.49378 5.55276 5.56202 5.91921 6.18523 6.48799 6.68656 7.32947 7.44452 8.82993 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.033725 B = 0.009976 C = 0.009003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.037273 B = 2805.974636 C = 3109.176571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.105 4.105 4 C 0.105 3.895 5 H 0.049 0.951 6 C -0.123 4.123 7 C 0.230 3.770 8 O -0.606 6.606 9 C -0.547 4.547 10 H 0.053 0.947 11 C 0.030 3.970 12 N -0.913 5.913 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.281 1.281 17 C -0.165 4.165 18 C 0.083 3.917 19 O -0.392 6.392 20 H 0.062 0.938 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.375 0.625 30 H 0.269 0.731 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 -4.669 -0.983 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.142 4.142 4 C 0.048 3.952 5 H 0.067 0.933 6 C -0.161 4.161 7 C 0.191 3.809 8 O -0.415 6.415 9 C -0.584 4.584 10 H 0.072 0.928 11 C -0.170 4.170 12 N -0.554 5.554 13 Si 0.779 3.221 14 H -0.196 1.196 15 H -0.203 1.203 16 H -0.207 1.207 17 C -0.204 4.204 18 C 0.007 3.993 19 O -0.312 6.312 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.225 0.775 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.375 -4.586 -1.133 10.498 hybrid contribution 1.727 -0.174 0.841 1.929 sum -7.648 -4.760 -0.293 9.013 Atomic orbital electron populations 1.21738 0.94257 1.02174 1.02111 1.21449 0.96822 0.95621 1.01845 1.21652 0.91124 0.98552 1.02920 1.22028 0.94921 0.91612 0.86674 0.93328 1.22027 0.95736 0.97686 1.00611 1.18963 0.90112 0.79746 0.92085 1.86097 1.27535 1.30545 1.97285 1.21905 0.92305 1.34105 1.10132 0.92828 1.25646 0.97157 0.95827 0.98357 1.69678 1.03691 1.45861 1.36181 0.85580 0.78284 0.78517 0.79708 1.19566 1.20254 1.20651 1.22644 1.03104 0.96937 0.97700 1.22338 0.80078 0.96023 1.00892 1.87715 1.21676 1.82557 1.39228 0.91886 0.92214 0.92490 0.92369 0.92477 0.89800 0.91316 0.92304 0.93234 0.77536 0.92115 0.95098 0.90024 0.94013 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.24 16 2 C -0.12 -3.15 5.83 30.59 0.18 -2.97 16 3 C -0.11 -3.18 4.92 30.60 0.15 -3.03 16 4 C 0.11 4.12 2.41 30.63 0.07 4.19 16 5 H 0.05 2.04 6.87 -2.39 -0.02 2.03 16 6 C -0.12 -5.45 4.53 30.68 0.14 -5.31 16 7 C 0.23 11.69 0.85 -11.42 -0.01 11.68 16 8 O -0.61 -33.02 12.97 -148.98 -1.93 -34.95 16 9 C -0.55 -29.00 6.51 25.60 0.17 -28.84 16 10 H 0.05 2.85 6.92 -2.91 -0.02 2.83 16 11 C 0.03 1.55 5.22 84.66 0.44 1.99 16 12 N -0.91 -48.41 9.69 21.45 0.21 -48.20 16 13 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 C -0.17 -7.94 5.09 30.68 0.16 -7.79 16 18 C 0.08 3.54 6.62 72.01 0.48 4.01 16 19 O -0.39 -16.03 9.94 -148.98 -1.48 -17.51 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.65 7.83 -2.39 -0.02 1.63 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 29 H 0.38 20.68 7.15 -74.06 -0.53 20.15 16 30 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 32 H 0.08 4.23 6.04 -2.39 -0.01 4.21 16 33 H 0.04 1.89 7.38 -2.39 -0.02 1.87 16 34 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -56.52 267.27 1.85 -54.67 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.54 Total: 30.45 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 2.49 Total: -28.29 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.21 Total: -48.20 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -3.41 Total: -52.47 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -56.52 1.85 -54.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.605 kcal (2) G-P(sol) polarization free energy of solvation -56.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds