Wall clock time and date at job start Mon Mar 30 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.53000 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.49131 * 54.97072 * 4 3 2 6 6 C 1.53095 * 109.48154 * 175.00074 * 4 3 2 7 7 C 1.53177 * 109.16576 * 177.58899 * 6 4 3 8 8 O 1.42911 * 109.53984 * 62.88438 * 7 6 4 9 9 C 1.50695 * 109.54573 * 183.06107 * 7 6 4 10 10 H 1.08002 * 120.00120 * 115.27921 * 9 7 6 11 11 C 1.37876 * 120.00152 * 295.27816 * 9 7 6 12 12 N 1.31517 * 120.00407 * 188.32929 * 11 9 7 13 13 Si 1.86806 * 119.99922 * 8.33392 * 11 9 7 14 14 H 1.48503 * 109.46958 * 84.77908 * 13 11 9 15 15 H 1.48495 * 109.46876 * 204.77711 * 13 11 9 16 16 H 1.48496 * 109.47191 * 324.78033 * 13 11 9 17 17 C 1.53168 * 109.03776 * 303.02229 * 7 6 4 18 18 C 1.53094 * 109.16577 * 56.97700 * 17 7 6 19 19 O 1.42904 * 109.48100 * 294.93944 * 4 3 2 20 20 H 1.08993 * 109.47494 * 300.00086 * 1 2 3 21 21 H 1.09007 * 109.46932 * 60.00543 * 1 2 3 22 22 H 1.08996 * 109.46872 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47096 * 240.00196 * 2 1 3 24 24 H 1.08997 * 109.47237 * 119.99895 * 2 1 3 25 25 H 1.09001 * 109.47482 * 60.00077 * 3 2 1 26 26 H 1.09002 * 109.47485 * 299.99525 * 3 2 1 27 27 H 1.09004 * 109.51955 * 297.49482 * 6 4 3 28 28 H 1.09001 * 109.52078 * 57.68270 * 6 4 3 29 29 H 0.96697 * 113.99346 * 179.97438 * 8 7 6 30 30 H 0.96992 * 120.00667 * 180.02562 * 12 11 9 31 31 H 1.08999 * 109.52480 * 176.88460 * 17 7 6 32 32 H 1.08998 * 109.52276 * 297.01059 * 17 7 6 33 33 H 1.09001 * 109.48301 * 62.37524 * 18 17 7 34 34 H 1.09001 * 109.48095 * 182.39976 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9341 0.8525 -0.8406 6 6 4.0806 2.8803 -0.1251 7 6 5.6111 2.8776 -0.0631 8 8 6.1332 2.1447 -1.1734 9 6 6.1201 4.2952 -0.1106 10 1 6.6440 4.7096 0.7380 11 6 5.9170 5.0632 -1.2375 12 7 6.4986 6.2377 -1.3465 13 14 4.8156 4.4355 -2.6096 14 1 3.4013 4.7642 -2.2985 15 1 5.2036 5.0802 -3.8898 16 1 4.9665 2.9633 -2.7311 17 6 6.0571 2.2146 1.2436 18 6 5.4702 0.8025 1.3165 19 8 4.0460 0.8746 1.2225 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.7553 3.3003 -1.0769 28 1 3.6840 3.4806 0.6936 29 1 7.0989 2.1026 -1.1976 30 1 6.3555 6.7782 -2.1391 31 1 7.1453 2.1585 1.2708 32 1 5.7013 2.8020 2.0900 33 1 5.8590 0.2041 0.4926 34 1 5.7492 0.3413 2.2640 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:07 Heat of formation + Delta-G solvation = -133.718059 kcal Electronic energy + Delta-G solvation = -15493.056799 eV Core-core repulsion = 13003.508099 eV Total energy + Delta-G solvation = -2489.548700 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75101 -37.56004 -35.78106 -34.48380 -32.76156 -32.08049 -28.71185 -27.02494 -24.54147 -23.16842 -21.82659 -20.86954 -19.23123 -17.42508 -17.34423 -16.83068 -16.06251 -15.78457 -15.43869 -15.33239 -14.80718 -14.22583 -13.89275 -13.83551 -13.59180 -13.12059 -12.91601 -12.62534 -12.38358 -12.24670 -12.14259 -11.83942 -11.71247 -11.48865 -11.28033 -11.00647 -10.73556 -10.46798 -9.84621 -8.39759 -6.51080 1.31488 1.40294 1.63220 2.36295 2.91858 2.97422 3.67262 3.84382 4.08930 4.13878 4.18941 4.32411 4.34091 4.46149 4.51973 4.66802 4.71613 4.80794 4.84275 4.94198 5.02587 5.10494 5.15317 5.30851 5.32944 5.38424 5.51510 5.54257 5.63296 6.07158 6.37711 6.58613 7.14651 7.32720 8.75029 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.011544 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.864098 B = 2424.905572 C = 2978.131346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.098 3.902 5 H 0.055 0.945 6 C -0.135 4.135 7 C 0.218 3.782 8 O -0.579 6.579 9 C -0.556 4.556 10 H 0.035 0.965 11 C 0.033 3.967 12 N -0.938 5.938 13 Si 0.939 3.061 14 H -0.281 1.281 15 H -0.311 1.311 16 H -0.209 1.209 17 C -0.160 4.160 18 C 0.069 3.931 19 O -0.388 6.388 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.372 0.628 30 H 0.266 0.734 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 -13.267 1.932 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.151 4.151 4 C 0.040 3.960 5 H 0.073 0.927 6 C -0.172 4.172 7 C 0.179 3.821 8 O -0.386 6.386 9 C -0.593 4.593 10 H 0.053 0.947 11 C -0.167 4.167 12 N -0.577 5.577 13 Si 0.766 3.234 14 H -0.208 1.208 15 H -0.240 1.240 16 H -0.131 1.131 17 C -0.198 4.198 18 C -0.008 4.008 19 O -0.308 6.308 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.220 0.780 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.603 -13.273 1.868 15.928 hybrid contribution 0.796 1.065 -0.616 1.466 sum -7.807 -12.208 1.252 14.545 Atomic orbital electron populations 1.21760 0.94615 1.02257 1.01943 1.21434 0.96604 0.95193 1.02168 1.21708 0.91846 0.98911 1.02672 1.22094 0.94979 0.92062 0.86849 0.92680 1.22411 0.96142 0.97718 1.00953 1.18973 0.90596 0.88454 0.84114 1.86467 1.25797 1.76581 1.49762 1.21762 1.37683 0.98467 1.01419 0.94689 1.25777 0.95810 0.94317 1.00770 1.70085 1.43956 1.13531 1.30141 0.86127 0.78032 0.82286 0.76937 1.20816 1.24000 1.13098 1.22603 1.01212 0.97449 0.98504 1.22600 0.80360 0.95214 1.02592 1.87791 1.21861 1.82245 1.38860 0.92621 0.92598 0.91600 0.92152 0.91768 0.91299 0.90725 0.93227 0.91621 0.78005 0.92510 0.90898 0.92479 0.92602 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.91 71.98 0.71 -2.18 16 2 C -0.12 -2.82 5.83 30.59 0.18 -2.64 16 3 C -0.11 -3.35 4.92 30.59 0.15 -3.20 16 4 C 0.10 3.47 2.49 30.63 0.08 3.55 16 5 H 0.06 2.02 7.82 -2.38 -0.02 2.00 16 6 C -0.13 -5.76 3.90 30.69 0.12 -5.64 16 7 C 0.22 9.82 0.54 -11.43 -0.01 9.82 16 8 O -0.58 -24.58 8.89 -148.98 -1.32 -25.90 16 9 C -0.56 -31.14 8.81 25.60 0.23 -30.92 16 10 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 11 C 0.03 1.91 5.45 84.65 0.46 2.37 16 12 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 13 Si 0.94 45.84 23.83 68.60 1.63 47.47 16 14 H -0.28 -13.32 6.93 99.48 0.69 -12.63 16 15 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 16 H -0.21 -9.60 5.45 99.48 0.54 -9.06 16 17 C -0.16 -6.09 5.07 30.68 0.16 -5.94 16 18 C 0.07 2.18 6.69 72.01 0.48 2.66 16 19 O -0.39 -13.44 9.94 -148.98 -1.48 -14.92 16 20 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.61 7.82 -2.39 -0.02 1.59 16 25 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.23 3.42 -2.38 -0.01 2.22 16 28 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 29 H 0.37 13.98 9.04 -74.06 -0.67 13.31 16 30 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 1.71 7.82 -2.39 -0.02 1.69 16 34 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -64.95 263.37 1.90 -63.05 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.22 Total: 20.69 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 2.56 Total: -32.12 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.30 Total: -58.27 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -2.81 Total: -40.82 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.63 Total: 47.47 kcal Total: -64.95 1.90 -63.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.664 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds