Wall clock time and date at job start Mon Mar 30 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.53004 * 109.46700 * 119.99617 * 2 1 3 5 5 H 1.09000 * 109.48481 * 299.97579 * 4 2 1 6 6 C 1.53097 * 109.47989 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16320 * 182.40692 * 6 4 2 8 8 O 1.42896 * 109.54331 * 297.02547 * 7 6 4 9 9 C 1.50705 * 109.54146 * 176.84585 * 7 6 4 10 10 H 1.07998 * 119.99866 * 0.02562 * 9 7 6 11 11 C 1.37871 * 119.99727 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00507 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00060 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46890 * 60.00170 * 13 11 9 15 15 H 1.48503 * 109.47350 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47434 * 300.00268 * 13 11 9 17 17 C 1.53207 * 109.03992 * 56.98185 * 7 6 4 18 18 C 1.53092 * 109.14859 * 303.02293 * 17 7 6 19 19 O 1.42898 * 109.48206 * 60.00119 * 4 2 1 20 20 H 1.09001 * 109.47737 * 300.00642 * 1 2 3 21 21 H 1.09004 * 109.46854 * 60.00070 * 1 2 3 22 22 H 1.09004 * 109.47502 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47737 * 239.99358 * 2 1 3 24 24 H 1.09000 * 109.47851 * 59.99723 * 3 2 1 25 25 H 1.09008 * 109.46787 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47093 * 299.98976 * 3 2 1 27 27 H 1.09003 * 109.51867 * 302.31556 * 6 4 2 28 28 H 1.09005 * 109.52093 * 62.43541 * 6 4 2 29 29 H 0.96700 * 113.99689 * 180.02562 * 8 7 6 30 30 H 0.96998 * 120.00728 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.53319 * 183.11811 * 17 7 6 32 32 H 1.08992 * 109.51748 * 62.92028 * 17 7 6 33 33 H 1.09002 * 109.48343 * 297.61643 * 18 17 7 34 34 H 1.08999 * 109.47546 * 177.59237 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6770 -0.2072 2.1394 6 6 3.5708 -0.7219 1.2493 7 6 4.0733 -1.4973 2.4711 8 8 3.6526 -0.8338 3.6646 9 6 5.5783 -1.5698 2.4382 10 1 6.1234 -1.1089 1.6278 11 6 6.2590 -2.2234 3.4432 12 7 5.5952 -2.7842 4.4303 13 14 8.1244 -2.3126 3.4029 14 1 8.6862 -0.9382 3.4242 15 1 8.6098 -3.0647 4.5878 16 1 8.5602 -3.0064 2.1644 17 6 3.4913 -2.9142 2.4378 18 6 1.9634 -2.8285 2.3919 19 8 1.5636 -2.0685 1.2496 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 3.9348 -1.1996 0.3396 28 1 3.9356 0.3044 1.2928 29 1 3.9369 -1.2711 4.4788 30 1 6.0741 -3.2445 5.1372 31 1 3.7990 -3.4556 3.3324 32 1 3.8536 -3.4360 1.5523 33 1 1.5992 -2.3424 3.2970 34 1 1.5450 -3.8327 2.3250 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:08 Heat of formation + Delta-G solvation = -121.780912 kcal Electronic energy + Delta-G solvation = -15580.143355 eV Core-core repulsion = 13091.112289 eV Total energy + Delta-G solvation = -2489.031066 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.94678 -35.70262 -34.59161 -32.08950 -30.50637 -29.21562 -26.87637 -25.84095 -23.04178 -22.28156 -19.67792 -18.92595 -16.89497 -15.65953 -15.18831 -15.01739 -14.35505 -13.85457 -13.61564 -13.18257 -13.00429 -12.40167 -12.27922 -11.89335 -11.81445 -11.39497 -10.99874 -10.91714 -10.79021 -10.64412 -10.48278 -10.27412 -10.15877 -9.90528 -9.59742 -9.22586 -8.64873 -8.55604 -7.90463 -6.16060 -4.27271 3.24201 3.28873 3.32091 4.31334 4.49141 5.07429 5.24659 5.32999 5.57853 5.88191 5.93145 5.98070 6.05556 6.10972 6.14545 6.18944 6.27800 6.34262 6.39784 6.43173 6.61678 6.64736 6.71960 6.85546 6.99380 7.23834 7.56125 7.65230 7.89991 8.15069 8.18438 8.74763 9.40768 9.54636 10.86482 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045796 B = 0.009452 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.265421 B = 2961.595911 C = 3283.142103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.100 3.900 5 H 0.056 0.944 6 C -0.124 4.124 7 C 0.250 3.750 8 O -0.593 6.593 9 C -0.533 4.533 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.901 5.901 13 Si 0.899 3.101 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C -0.169 4.169 18 C 0.065 3.935 19 O -0.393 6.393 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.379 0.621 30 H 0.267 0.733 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 2.818 -4.773 8.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.203 4.203 4 C 0.043 3.957 5 H 0.074 0.926 6 C -0.162 4.162 7 C 0.211 3.789 8 O -0.402 6.402 9 C -0.572 4.572 10 H 0.077 0.923 11 C -0.132 4.132 12 N -0.542 5.542 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.202 1.202 17 C -0.208 4.208 18 C -0.012 4.012 19 O -0.313 6.313 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.520 3.054 -5.190 8.876 hybrid contribution 1.587 -0.529 0.677 1.804 sum -4.933 2.525 -4.513 7.147 Atomic orbital electron populations 1.21748 0.95389 1.01986 1.00631 1.21117 0.95808 0.95677 0.98245 1.21843 1.01771 0.95384 1.01271 1.22046 0.94238 0.82862 0.96592 0.92574 1.22148 0.94073 1.01075 0.98870 1.18596 0.91684 0.86703 0.81923 1.86089 1.79969 1.56618 1.17535 1.21730 0.92123 1.34634 1.08666 0.92345 1.25001 0.98963 0.94135 0.95139 1.69573 1.35790 1.36839 1.11963 0.86539 0.85002 0.78258 0.77505 1.20142 1.21141 1.20203 1.22784 0.92654 1.01833 1.03487 1.22580 0.96818 0.94024 0.87760 1.87711 1.75028 1.23712 1.44845 0.93182 0.93508 0.92076 0.91053 0.92685 0.91929 0.92926 0.91824 0.91737 0.77033 0.92292 0.88365 0.93117 0.93852 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.05 37.15 0.34 -1.65 16 2 C -0.09 -1.44 2.72 -90.62 -0.25 -1.69 16 3 C -0.15 -2.07 8.84 37.16 0.33 -1.74 16 4 C 0.10 1.98 2.08 -26.68 -0.06 1.92 16 5 H 0.06 1.18 7.82 -51.93 -0.41 0.78 16 6 C -0.12 -2.73 3.94 -26.59 -0.10 -2.84 16 7 C 0.25 6.27 0.67 -91.57 -0.06 6.21 16 8 O -0.59 -15.38 11.94 -35.23 -0.42 -15.80 16 9 C -0.53 -14.50 8.25 -34.44 -0.28 -14.78 16 10 H 0.06 1.58 7.75 -52.49 -0.41 1.18 16 11 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 12 N -0.90 -24.04 9.75 55.43 0.54 -23.50 16 13 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.17 -4.03 4.86 -26.58 -0.13 -4.16 16 18 C 0.06 1.35 6.69 37.20 0.25 1.60 16 19 O -0.39 -8.16 9.73 -35.23 -0.34 -8.50 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 23 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.93 6.49 -51.92 -0.34 0.59 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.06 1.40 6.57 -51.93 -0.34 1.06 16 29 H 0.38 10.04 7.14 45.56 0.33 10.37 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.10 2.50 6.21 -51.93 -0.32 2.18 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.04 0.92 7.82 -51.93 -0.41 0.51 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 265.52 15.07 4.00 4.00 Total: -1.00 -27.33 265.52 -6.11 -33.45 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -4.81 Total: 9.91 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -0.06 Total: -15.39 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.54 Total: -23.50 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.76 Total: -24.30 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.33 -6.11 -33.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.335 kcal (2) G-P(sol) polarization free energy of solvation -27.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds