Wall clock time and date at job start Mon Mar 30 2020 02:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.53004 * 109.46700 * 119.99617 * 2 1 3 5 5 H 1.09000 * 109.48481 * 299.97579 * 4 2 1 6 6 C 1.53097 * 109.47989 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.16320 * 182.40692 * 6 4 2 8 8 O 1.42896 * 109.54331 * 297.02547 * 7 6 4 9 9 C 1.50705 * 109.54146 * 176.84585 * 7 6 4 10 10 H 1.07998 * 119.99866 * 0.02562 * 9 7 6 11 11 C 1.37871 * 119.99727 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00507 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00060 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.46890 * 60.00170 * 13 11 9 15 15 H 1.48503 * 109.47350 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47434 * 300.00268 * 13 11 9 17 17 C 1.53207 * 109.03992 * 56.98185 * 7 6 4 18 18 C 1.53092 * 109.14859 * 303.02293 * 17 7 6 19 19 O 1.42898 * 109.48206 * 60.00119 * 4 2 1 20 20 H 1.09001 * 109.47737 * 300.00642 * 1 2 3 21 21 H 1.09004 * 109.46854 * 60.00070 * 1 2 3 22 22 H 1.09004 * 109.47502 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47737 * 239.99358 * 2 1 3 24 24 H 1.09000 * 109.47851 * 59.99723 * 3 2 1 25 25 H 1.09008 * 109.46787 * 179.97438 * 3 2 1 26 26 H 1.08999 * 109.47093 * 299.98976 * 3 2 1 27 27 H 1.09003 * 109.51867 * 302.31556 * 6 4 2 28 28 H 1.09005 * 109.52093 * 62.43541 * 6 4 2 29 29 H 0.96700 * 113.99689 * 180.02562 * 8 7 6 30 30 H 0.96998 * 120.00728 * 179.97438 * 12 11 9 31 31 H 1.08999 * 109.53319 * 183.11811 * 17 7 6 32 32 H 1.08992 * 109.51748 * 62.92028 * 17 7 6 33 33 H 1.09002 * 109.48343 * 297.61643 * 18 17 7 34 34 H 1.08999 * 109.47546 * 177.59237 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.6770 -0.2072 2.1394 6 6 3.5708 -0.7219 1.2493 7 6 4.0733 -1.4973 2.4711 8 8 3.6526 -0.8338 3.6646 9 6 5.5783 -1.5698 2.4382 10 1 6.1234 -1.1089 1.6278 11 6 6.2590 -2.2234 3.4432 12 7 5.5952 -2.7842 4.4303 13 14 8.1244 -2.3126 3.4029 14 1 8.6862 -0.9382 3.4242 15 1 8.6098 -3.0647 4.5878 16 1 8.5602 -3.0064 2.1644 17 6 3.4913 -2.9142 2.4378 18 6 1.9634 -2.8285 2.3919 19 8 1.5636 -2.0685 1.2496 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 1.6766 1.9564 0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9562 -0.8901 27 1 3.9348 -1.1996 0.3396 28 1 3.9356 0.3044 1.2928 29 1 3.9369 -1.2711 4.4788 30 1 6.0741 -3.2445 5.1372 31 1 3.7990 -3.4556 3.3324 32 1 3.8536 -3.4360 1.5523 33 1 1.5992 -2.3424 3.2970 34 1 1.5450 -3.8327 2.3250 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879059.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:08 Heat of formation + Delta-G solvation = -139.522392 kcal Electronic energy + Delta-G solvation = -15580.912683 eV Core-core repulsion = 13091.112289 eV Total energy + Delta-G solvation = -2489.800395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65866 -37.50315 -36.06188 -34.15554 -32.39702 -30.86665 -28.21741 -27.59716 -24.68161 -24.09131 -21.07016 -20.79480 -18.89380 -17.26385 -17.03443 -16.89033 -16.13152 -15.49647 -15.25824 -14.80049 -14.57884 -14.03265 -13.72819 -13.54395 -13.32164 -12.96128 -12.84899 -12.64080 -12.41638 -12.24473 -12.02305 -11.95688 -11.84962 -11.60472 -11.36033 -10.90309 -10.61277 -10.45275 -9.84978 -8.18313 -6.38079 1.39392 1.40038 1.47910 2.36964 2.93341 3.01494 3.87541 4.00677 4.14914 4.31056 4.33879 4.43800 4.48206 4.56968 4.66974 4.75036 4.84744 4.86475 5.01639 5.04192 5.09051 5.18166 5.25039 5.35405 5.45968 5.53930 5.54669 5.70246 5.93868 6.15889 6.44926 6.66635 7.32799 7.45482 8.81545 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045796 B = 0.009452 C = 0.008526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.265421 B = 2961.595911 C = 3283.142103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 C -0.142 4.142 4 C 0.103 3.897 5 H 0.042 0.958 6 C -0.119 4.119 7 C 0.236 3.764 8 O -0.597 6.597 9 C -0.564 4.564 10 H 0.050 0.950 11 C 0.029 3.971 12 N -0.912 5.912 13 Si 0.958 3.042 14 H -0.275 1.275 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.162 4.162 18 C 0.070 3.930 19 O -0.393 6.393 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.374 0.626 30 H 0.270 0.730 31 H 0.079 0.921 32 H 0.040 0.960 33 H 0.039 0.961 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 3.173 -5.602 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.200 4.200 4 C 0.045 3.955 5 H 0.060 0.940 6 C -0.157 4.157 7 C 0.197 3.803 8 O -0.406 6.406 9 C -0.602 4.602 10 H 0.068 0.932 11 C -0.171 4.171 12 N -0.553 5.553 13 Si 0.783 3.217 14 H -0.201 1.201 15 H -0.203 1.203 16 H -0.199 1.199 17 C -0.201 4.201 18 C -0.006 4.006 19 O -0.312 6.312 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.979 3.412 -6.025 9.831 hybrid contribution 1.739 -0.639 0.953 2.083 sum -5.240 2.773 -5.072 7.802 Atomic orbital electron populations 1.21708 0.93613 1.01858 1.02077 1.21148 0.97290 0.96161 0.96018 1.21832 1.01035 0.94391 1.02706 1.22118 0.92548 0.82654 0.98175 0.93972 1.22088 0.95943 1.00415 0.97272 1.18826 0.91168 0.87884 0.82452 1.86085 1.79945 1.56865 1.17656 1.22009 0.93570 1.35573 1.09043 0.93212 1.25677 1.02917 0.93686 0.94803 1.69660 1.37049 1.36528 1.12025 0.85623 0.80206 0.78156 0.77675 1.20080 1.20346 1.19911 1.22627 0.94833 1.00677 1.01915 1.22538 0.94690 0.95548 0.87864 1.87728 1.74771 1.24152 1.44596 0.93036 0.90789 0.92999 0.90935 0.92722 0.93093 0.90031 0.92076 0.91892 0.77711 0.92073 0.90292 0.94158 0.94265 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.05 71.98 0.65 -2.82 16 2 C -0.09 -2.64 2.72 -10.79 -0.03 -2.67 16 3 C -0.14 -3.74 8.84 71.98 0.64 -3.11 16 4 C 0.10 3.97 2.08 30.63 0.06 4.03 16 5 H 0.04 1.76 7.82 -2.39 -0.02 1.74 16 6 C -0.12 -5.27 3.94 30.69 0.12 -5.15 16 7 C 0.24 11.95 0.67 -11.41 -0.01 11.94 16 8 O -0.60 -31.40 11.94 -148.98 -1.78 -33.18 16 9 C -0.56 -31.02 8.25 25.60 0.21 -30.81 16 10 H 0.05 2.74 7.75 -2.91 -0.02 2.72 16 11 C 0.03 1.55 5.22 84.65 0.44 1.99 16 12 N -0.91 -48.89 9.75 21.45 0.21 -48.68 16 13 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 C -0.16 -7.76 4.86 30.69 0.15 -7.61 16 18 C 0.07 2.87 6.69 72.01 0.48 3.35 16 19 O -0.39 -15.84 9.73 -148.98 -1.45 -17.29 16 20 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 22 H 0.05 1.42 7.68 -2.39 -0.02 1.40 16 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.44 6.49 -2.38 -0.02 1.43 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 28 H 0.06 2.75 6.57 -2.38 -0.02 2.73 16 29 H 0.37 20.18 7.14 -74.06 -0.53 19.65 16 30 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.08 4.08 6.21 -2.39 -0.01 4.06 16 32 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.04 1.64 7.82 -2.39 -0.02 1.62 16 34 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -57.23 265.52 2.27 -54.96 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: 0.54 Total: 30.35 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 2.72 Total: -30.85 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.21 Total: -48.68 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -3.23 Total: -50.46 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -57.23 2.27 -54.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879059.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.564 kcal (2) G-P(sol) polarization free energy of solvation -57.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds