Wall clock time and date at job start Mon Mar 30 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46867 * 2 1 4 4 C 1.52997 * 109.47253 * 119.99961 * 2 1 3 5 5 H 1.08997 * 109.48069 * 299.98111 * 4 2 1 6 6 C 1.53092 * 109.49106 * 179.97438 * 4 2 1 7 7 C 1.53175 * 109.16179 * 182.40396 * 6 4 2 8 8 O 1.42908 * 109.54043 * 176.84918 * 7 6 4 9 9 C 1.50699 * 109.54351 * 297.11365 * 7 6 4 10 10 H 1.07998 * 120.00206 * 359.55608 * 9 7 6 11 11 C 1.37882 * 119.99648 * 179.55780 * 9 7 6 12 12 N 1.31508 * 120.00187 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99880 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46888 * 60.00080 * 13 11 9 15 15 H 1.48498 * 109.47385 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47287 * 300.00652 * 13 11 9 17 17 C 1.53176 * 109.03666 * 56.98460 * 7 6 4 18 18 C 1.53090 * 109.16134 * 303.01424 * 17 7 6 19 19 O 1.42900 * 109.41229 * 57.61417 * 18 17 7 20 20 H 1.09007 * 109.47140 * 299.99872 * 1 2 3 21 21 H 1.08997 * 109.47635 * 59.99606 * 1 2 3 22 22 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46850 * 240.00134 * 2 1 3 24 24 H 1.08998 * 109.47299 * 300.00033 * 3 2 1 25 25 H 1.08998 * 109.47276 * 60.00395 * 3 2 1 26 26 H 1.09003 * 109.46820 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.51892 * 62.49630 * 6 4 2 28 28 H 1.08998 * 109.52361 * 302.31312 * 6 4 2 29 29 H 0.96692 * 113.99950 * 180.44079 * 8 7 6 30 30 H 0.97002 * 120.00274 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.52023 * 62.92336 * 17 7 6 32 32 H 1.09000 * 109.51703 * 183.11177 * 17 7 6 33 33 H 1.09003 * 109.47673 * 177.59165 * 18 17 7 34 34 H 1.08993 * 109.48332 * 297.62514 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -0.2073 2.1393 6 6 3.5710 -0.7220 1.2493 7 6 4.0732 -1.4975 2.4711 8 8 5.5003 -1.5661 2.4400 9 6 3.6276 -0.7988 3.7298 10 1 3.0504 0.1118 3.6665 11 6 3.9569 -1.3222 4.9622 12 7 4.6602 -2.4307 5.0392 13 14 3.4051 -0.4558 6.5224 14 1 1.9222 -0.3809 6.5490 15 1 3.8831 -1.2150 7.7057 16 1 3.9706 0.9170 6.5528 17 6 3.4912 -2.9140 2.4377 18 6 1.9634 -2.8285 2.3917 19 8 1.5644 -2.0688 1.2491 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 3.9357 0.3042 1.2939 28 1 3.9350 -1.1997 0.3397 29 1 5.8870 -2.0503 3.1824 30 1 4.8921 -2.7987 5.9062 31 1 3.8538 -3.4359 1.5521 32 1 3.7991 -3.4553 3.3323 33 1 1.5451 -3.8328 2.3247 34 1 1.5991 -2.3425 3.2967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879064.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:11 Heat of formation + Delta-G solvation = -138.283327 kcal Electronic energy + Delta-G solvation = -15726.956287 eV Core-core repulsion = 13237.209622 eV Total energy + Delta-G solvation = -2489.746665 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67230 -37.55259 -36.06734 -34.17802 -32.45051 -30.81997 -28.04616 -27.37069 -24.83857 -24.20836 -21.03641 -20.95662 -18.61605 -17.30795 -17.12257 -17.01356 -15.89981 -15.45781 -15.13039 -14.94090 -14.45416 -14.20062 -13.88688 -13.56954 -13.27605 -12.90627 -12.74828 -12.63216 -12.36543 -12.32639 -12.08261 -11.91545 -11.85689 -11.55593 -11.17752 -10.88370 -10.65236 -10.24329 -10.03506 -8.17708 -6.35611 1.39759 1.41376 1.48244 2.37488 2.96091 3.03058 3.73076 4.07287 4.20202 4.31764 4.38966 4.48805 4.49911 4.59729 4.67697 4.84152 4.86472 4.95572 5.02350 5.05686 5.18879 5.18987 5.26088 5.31942 5.46425 5.50329 5.55330 5.56506 5.92539 6.19503 6.49331 6.69009 7.33636 7.44917 8.83557 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.011407 C = 0.010622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.907034 B = 2454.074900 C = 2635.341456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.143 4.143 4 C 0.111 3.889 5 H 0.047 0.953 6 C -0.120 4.120 7 C 0.230 3.770 8 O -0.605 6.605 9 C -0.547 4.547 10 H 0.053 0.947 11 C 0.031 3.969 12 N -0.913 5.913 13 Si 0.952 3.048 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.276 1.276 17 C -0.166 4.166 18 C 0.084 3.916 19 O -0.393 6.393 20 H 0.050 0.950 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.375 0.625 30 H 0.269 0.731 31 H 0.029 0.971 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.535 3.167 -5.733 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 C -0.200 4.200 4 C 0.053 3.947 5 H 0.065 0.935 6 C -0.158 4.158 7 C 0.191 3.809 8 O -0.414 6.414 9 C -0.585 4.585 10 H 0.071 0.929 11 C -0.169 4.169 12 N -0.553 5.553 13 Si 0.778 3.222 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.202 1.202 17 C -0.204 4.204 18 C 0.007 3.993 19 O -0.313 6.313 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.224 0.776 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.663 3.318 -6.303 9.754 hybrid contribution 0.455 -0.126 1.867 1.926 sum -6.209 3.191 -4.436 8.271 Atomic orbital electron populations 1.21710 0.93594 1.01909 1.02082 1.21143 0.97284 0.96150 0.95968 1.21838 1.01038 0.94404 1.02740 1.22044 0.91445 0.82865 0.98324 0.93516 1.22039 0.96594 1.00193 0.96985 1.18957 0.78079 0.91299 0.92517 1.86101 1.23504 1.79801 1.51998 1.21834 1.34902 1.09874 0.91922 0.92886 1.25631 0.94460 0.95130 1.01668 1.69666 1.38969 1.20636 1.26040 0.85705 0.78816 0.78673 0.79023 1.19621 1.20628 1.20168 1.22657 0.96745 1.00344 1.00702 1.22334 0.93918 0.95137 0.87909 1.87699 1.74929 1.24111 1.44533 0.93079 0.90723 0.92959 0.90918 0.89993 0.92720 0.93068 0.91888 0.93575 0.77597 0.92122 0.95176 0.89940 0.88756 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.05 71.98 0.65 -2.90 16 2 C -0.09 -2.65 2.72 -10.80 -0.03 -2.68 16 3 C -0.14 -3.80 8.84 71.98 0.64 -3.16 16 4 C 0.11 4.36 1.99 30.62 0.06 4.42 16 5 H 0.05 1.99 6.87 -2.39 -0.02 1.97 16 6 C -0.12 -5.34 4.10 30.68 0.13 -5.22 16 7 C 0.23 11.72 0.85 -11.42 -0.01 11.71 16 8 O -0.61 -32.96 12.97 -148.98 -1.93 -34.89 16 9 C -0.55 -29.04 6.50 25.60 0.17 -28.87 16 10 H 0.05 2.81 6.92 -2.91 -0.02 2.79 16 11 C 0.03 1.61 5.22 84.66 0.44 2.05 16 12 N -0.91 -48.36 9.69 21.45 0.21 -48.15 16 13 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 17 C -0.17 -7.99 5.08 30.68 0.16 -7.84 16 18 C 0.08 3.57 6.62 72.01 0.48 4.05 16 19 O -0.39 -16.19 9.73 -148.98 -1.45 -17.64 16 20 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 21 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.46 7.68 -2.39 -0.02 1.44 16 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.46 6.49 -2.39 -0.02 1.44 16 27 H 0.06 2.76 6.57 -2.38 -0.02 2.75 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.37 20.62 7.18 -74.06 -0.53 20.09 16 30 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 31 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 4.28 6.01 -2.39 -0.01 4.26 16 33 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.04 1.87 7.38 -2.39 -0.02 1.85 16 Total: -1.00 -56.57 262.78 2.07 -54.50 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.54 Total: 30.79 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 2.68 Total: -28.43 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.21 Total: -48.15 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -3.38 Total: -52.53 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -56.57 2.07 -54.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879064.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.788 kcal (2) G-P(sol) polarization free energy of solvation -56.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds