Wall clock time and date at job start Mon Mar 30 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 C 1.52997 * 109.47057 * 119.99831 * 2 1 3 5 5 H 1.09005 * 109.48844 * 60.03384 * 4 2 1 6 6 C 1.53096 * 109.48028 * 180.02562 * 4 2 1 7 7 C 1.53172 * 109.16237 * 177.59332 * 6 4 2 8 8 O 1.42904 * 109.54567 * 62.88888 * 7 6 4 9 9 C 1.50707 * 109.54184 * 183.15231 * 7 6 4 10 10 H 1.07992 * 120.00157 * 359.55558 * 9 7 6 11 11 C 1.37875 * 119.99634 * 179.55460 * 9 7 6 12 12 N 1.31518 * 120.00626 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99740 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46918 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46851 * 120.00157 * 13 11 9 16 16 H 1.48501 * 109.47437 * 240.00363 * 13 11 9 17 17 C 1.53174 * 109.03844 * 303.01800 * 7 6 4 18 18 C 1.53093 * 109.16375 * 56.98496 * 17 7 6 19 19 O 1.42905 * 109.41141 * 302.39044 * 18 17 7 20 20 H 1.09001 * 109.47152 * 60.00011 * 1 2 3 21 21 H 1.09008 * 109.47202 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47756 * 299.99527 * 1 2 3 23 23 H 1.09001 * 109.47231 * 240.00468 * 2 1 3 24 24 H 1.08998 * 109.47029 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47467 * 300.00406 * 3 2 1 26 26 H 1.09001 * 109.47263 * 59.99927 * 3 2 1 27 27 H 1.08996 * 109.51862 * 297.49850 * 6 4 2 28 28 H 1.08993 * 109.51849 * 57.68896 * 6 4 2 29 29 H 0.96701 * 114.00110 * 180.44326 * 8 7 6 30 30 H 0.96991 * 119.99927 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.52606 * 297.07957 * 17 7 6 32 32 H 1.09007 * 109.52515 * 176.88525 * 17 7 6 33 33 H 1.08996 * 109.48657 * 182.40855 * 18 17 7 34 34 H 1.09002 * 109.48315 * 62.36673 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6773 -1.7491 1.2492 6 6 3.5709 -0.7208 1.2498 7 6 4.0734 -1.3910 2.5322 8 8 3.6510 -2.7559 2.5554 9 6 5.5784 -1.3263 2.5784 10 1 6.1239 -0.8610 1.7708 11 6 6.2587 -1.8611 3.6517 12 7 5.5944 -2.4282 4.6350 13 14 8.1242 -1.7816 3.7087 14 1 8.6279 -1.0984 2.4901 15 1 8.5507 -1.0239 4.9125 16 1 8.6768 -3.1586 3.7689 17 6 3.4915 -0.6538 3.7422 18 6 1.9637 -0.6569 3.6455 19 8 1.5644 -0.0473 2.4162 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3635 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 3.9356 -1.2726 0.3834 28 1 3.9348 0.3058 1.2086 29 1 3.9292 -3.2404 3.3447 30 1 6.0731 -2.8047 5.3899 31 1 3.8538 0.3742 3.7514 32 1 3.7994 -1.1578 4.6585 33 1 1.5453 -0.0967 4.4817 34 1 1.5994 -1.6838 3.6771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879070.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:13 Heat of formation + Delta-G solvation = -120.639510 kcal Electronic energy + Delta-G solvation = -15634.284292 eV Core-core repulsion = 13145.302721 eV Total energy + Delta-G solvation = -2488.981571 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98574 -35.72994 -34.39177 -32.09946 -30.50537 -29.17693 -26.80094 -25.98362 -23.08892 -22.37598 -19.62763 -18.74215 -16.90608 -15.51455 -15.09169 -14.96245 -14.26784 -14.08915 -13.77427 -13.21485 -13.01716 -12.46856 -12.32354 -11.79602 -11.53100 -11.36539 -11.06547 -10.99196 -10.79954 -10.47741 -10.44018 -10.24729 -10.12132 -9.88030 -9.64739 -9.20076 -8.64027 -8.56426 -7.90109 -6.16223 -4.27389 3.21209 3.29894 3.34393 4.31290 4.56442 5.07357 5.27096 5.36392 5.46214 5.96503 5.96919 6.00482 6.06853 6.13450 6.16857 6.25368 6.30113 6.34874 6.40759 6.50300 6.64456 6.67804 6.77852 6.81840 7.01470 7.24155 7.56926 7.65533 7.90378 8.15465 8.18694 8.75384 9.40741 9.53907 10.86161 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048210 B = 0.009361 C = 0.008689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.652640 B = 2990.274685 C = 3221.701851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.143 4.143 4 C 0.100 3.900 5 H 0.055 0.945 6 C -0.125 4.125 7 C 0.250 3.750 8 O -0.593 6.593 9 C -0.532 4.532 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.899 3.101 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.169 4.169 18 C 0.064 3.936 19 O -0.389 6.389 20 H 0.046 0.954 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.379 0.621 30 H 0.266 0.734 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.224 3.586 -4.295 8.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.200 4.200 4 C 0.042 3.958 5 H 0.073 0.927 6 C -0.162 4.162 7 C 0.210 3.790 8 O -0.402 6.402 9 C -0.570 4.570 10 H 0.078 0.922 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.726 3.274 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.207 4.207 18 C -0.012 4.012 19 O -0.309 6.309 20 H 0.065 0.935 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.566 3.838 -4.717 8.949 hybrid contribution 1.582 -0.381 0.789 1.809 sum -4.984 3.457 -3.928 7.226 Atomic orbital electron populations 1.21753 0.95431 1.01255 1.01371 1.21175 0.95799 0.96952 0.96852 1.21797 1.01293 0.95779 1.01148 1.22016 0.94230 0.94754 0.84757 0.92664 1.22161 0.94094 1.00486 0.99500 1.18611 0.91711 0.79511 0.89131 1.86096 1.80244 1.25402 1.48490 1.21803 0.92135 1.37643 1.05413 0.92248 1.25009 0.98963 0.94357 0.94963 1.69601 1.35574 1.39293 1.09650 0.86434 0.85084 0.77823 0.78021 1.19742 1.20909 1.20855 1.22779 0.92660 1.01063 1.04226 1.22580 0.96803 0.96700 0.85154 1.87715 1.75021 1.54281 1.13879 0.93530 0.93245 0.91994 0.90811 0.92353 0.93761 0.91996 0.92240 0.91257 0.77095 0.92430 0.93142 0.88334 0.91067 0.93900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.05 37.16 0.34 -1.65 16 2 C -0.09 -1.42 2.81 -90.62 -0.25 -1.68 16 3 C -0.14 -2.16 8.70 37.16 0.32 -1.83 16 4 C 0.10 1.96 2.23 -26.68 -0.06 1.90 16 5 H 0.06 1.15 7.82 -51.93 -0.41 0.75 16 6 C -0.12 -2.74 4.08 -26.59 -0.11 -2.85 16 7 C 0.25 6.24 0.67 -91.59 -0.06 6.17 16 8 O -0.59 -15.37 11.93 -35.23 -0.42 -15.79 16 9 C -0.53 -14.44 8.26 -34.44 -0.28 -14.72 16 10 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 11 C 0.07 1.81 5.22 -17.82 -0.09 1.72 16 12 N -0.90 -24.00 9.75 55.43 0.54 -23.46 16 13 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C -0.17 -3.99 4.85 -26.59 -0.13 -4.12 16 18 C 0.06 1.32 6.69 37.21 0.25 1.57 16 19 O -0.39 -7.90 9.06 -35.23 -0.32 -8.21 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 22 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.91 6.38 -51.93 -0.33 0.58 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.49 6.31 -51.93 -0.33 1.17 16 29 H 0.38 10.02 7.18 45.56 0.33 10.35 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.10 2.50 6.18 -51.92 -0.32 2.18 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.04 0.90 7.82 -51.93 -0.41 0.49 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -27.21 264.25 -6.08 -33.29 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.76 Total: 9.86 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.08 Total: -15.49 kcal Atomic # 7 Polarization: -24.00 SS G_CDS: 0.54 Total: -23.46 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.74 Total: -24.01 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.21 -6.08 -33.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879070.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.352 kcal (2) G-P(sol) polarization free energy of solvation -27.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds