Wall clock time and date at job start Mon Mar 30 2020 02:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 C 1.52997 * 109.47057 * 119.99831 * 2 1 3 5 5 H 1.09005 * 109.48844 * 60.03384 * 4 2 1 6 6 C 1.53096 * 109.48028 * 180.02562 * 4 2 1 7 7 C 1.53172 * 109.16237 * 177.59332 * 6 4 2 8 8 O 1.42904 * 109.54567 * 62.88888 * 7 6 4 9 9 C 1.50707 * 109.54184 * 183.15231 * 7 6 4 10 10 H 1.07992 * 120.00157 * 359.55558 * 9 7 6 11 11 C 1.37875 * 119.99634 * 179.55460 * 9 7 6 12 12 N 1.31518 * 120.00626 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99740 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46918 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46851 * 120.00157 * 13 11 9 16 16 H 1.48501 * 109.47437 * 240.00363 * 13 11 9 17 17 C 1.53174 * 109.03844 * 303.01800 * 7 6 4 18 18 C 1.53093 * 109.16375 * 56.98496 * 17 7 6 19 19 O 1.42905 * 109.41141 * 302.39044 * 18 17 7 20 20 H 1.09001 * 109.47152 * 60.00011 * 1 2 3 21 21 H 1.09008 * 109.47202 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47756 * 299.99527 * 1 2 3 23 23 H 1.09001 * 109.47231 * 240.00468 * 2 1 3 24 24 H 1.08998 * 109.47029 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.47467 * 300.00406 * 3 2 1 26 26 H 1.09001 * 109.47263 * 59.99927 * 3 2 1 27 27 H 1.08996 * 109.51862 * 297.49850 * 6 4 2 28 28 H 1.08993 * 109.51849 * 57.68896 * 6 4 2 29 29 H 0.96701 * 114.00110 * 180.44326 * 8 7 6 30 30 H 0.96991 * 119.99927 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.52606 * 297.07957 * 17 7 6 32 32 H 1.09007 * 109.52515 * 176.88525 * 17 7 6 33 33 H 1.08996 * 109.48657 * 182.40855 * 18 17 7 34 34 H 1.09002 * 109.48315 * 62.36673 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6773 -1.7491 1.2492 6 6 3.5709 -0.7208 1.2498 7 6 4.0734 -1.3910 2.5322 8 8 3.6510 -2.7559 2.5554 9 6 5.5784 -1.3263 2.5784 10 1 6.1239 -0.8610 1.7708 11 6 6.2587 -1.8611 3.6517 12 7 5.5944 -2.4282 4.6350 13 14 8.1242 -1.7816 3.7087 14 1 8.6279 -1.0984 2.4901 15 1 8.5507 -1.0239 4.9125 16 1 8.6768 -3.1586 3.7689 17 6 3.4915 -0.6538 3.7422 18 6 1.9637 -0.6569 3.6455 19 8 1.5644 -0.0473 2.4162 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3635 0.5137 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9564 0.8900 27 1 3.9356 -1.2726 0.3834 28 1 3.9348 0.3058 1.2086 29 1 3.9292 -3.2404 3.3447 30 1 6.0731 -2.8047 5.3899 31 1 3.8538 0.3742 3.7514 32 1 3.7994 -1.1578 4.6585 33 1 1.5453 -0.0967 4.4817 34 1 1.5994 -1.6838 3.6771 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879070.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:13 Heat of formation + Delta-G solvation = -138.198935 kcal Electronic energy + Delta-G solvation = -15635.045726 eV Core-core repulsion = 13145.302721 eV Total energy + Delta-G solvation = -2489.743005 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68005 -37.53276 -35.85916 -34.16408 -32.38834 -30.81694 -28.08807 -27.80385 -24.73634 -24.16588 -21.16694 -20.48181 -18.89336 -17.16601 -17.00235 -16.71072 -16.04039 -15.68500 -15.38403 -14.74701 -14.71057 -14.09786 -13.86534 -13.45377 -13.15242 -12.89617 -12.84584 -12.52958 -12.46360 -12.23138 -12.07178 -11.98158 -11.66914 -11.51607 -11.43305 -10.86671 -10.61461 -10.43153 -9.83964 -8.18270 -6.38032 1.36578 1.40012 1.50371 2.36854 2.99266 3.01644 3.90194 3.98617 4.14196 4.27636 4.35585 4.44862 4.51197 4.58869 4.72345 4.79148 4.85817 4.92873 5.01831 5.07628 5.11973 5.20301 5.25083 5.36910 5.47912 5.54877 5.60390 5.72563 5.95552 6.16519 6.46463 6.67323 7.32981 7.45181 8.81610 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048210 B = 0.009361 C = 0.008689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.652640 B = 2990.274685 C = 3221.701851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.140 4.140 4 C 0.103 3.897 5 H 0.041 0.959 6 C -0.120 4.120 7 C 0.235 3.765 8 O -0.598 6.598 9 C -0.562 4.562 10 H 0.049 0.951 11 C 0.029 3.971 12 N -0.912 5.912 13 Si 0.958 3.042 14 H -0.274 1.274 15 H -0.277 1.277 16 H -0.278 1.278 17 C -0.161 4.161 18 C 0.070 3.930 19 O -0.386 6.386 20 H 0.072 0.928 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.373 0.627 30 H 0.269 0.731 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 4.245 -4.960 9.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 C -0.197 4.197 4 C 0.045 3.955 5 H 0.059 0.941 6 C -0.158 4.158 7 C 0.196 3.804 8 O -0.406 6.406 9 C -0.600 4.600 10 H 0.067 0.933 11 C -0.171 4.171 12 N -0.552 5.552 13 Si 0.784 3.216 14 H -0.198 1.198 15 H -0.203 1.203 16 H -0.204 1.204 17 C -0.199 4.199 18 C -0.007 4.007 19 O -0.305 6.305 20 H 0.091 0.909 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.091 0.909 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.222 0.778 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.043 4.501 -5.387 9.944 hybrid contribution 1.743 -0.607 1.002 2.100 sum -5.300 3.894 -4.385 7.905 Atomic orbital electron populations 1.21709 0.93665 1.01684 1.02237 1.21220 0.97278 0.97109 0.95053 1.21765 1.00551 0.95302 1.02057 1.22065 0.92475 0.94788 0.86182 0.94132 1.22108 0.96028 0.99932 0.97746 1.18843 0.91153 0.79262 0.91122 1.86093 1.80223 1.26114 1.48186 1.22062 0.93605 1.38643 1.05677 0.93270 1.25679 1.02886 0.93946 0.94610 1.69684 1.36858 1.38974 1.09732 0.85518 0.80316 0.77857 0.77954 1.19814 1.20271 1.20393 1.22611 0.94861 0.99766 1.02706 1.22530 0.94637 0.97135 0.86378 1.87735 1.74691 1.54237 1.13869 0.90884 0.93087 0.92897 0.89612 0.93481 0.90906 0.93028 0.92768 0.91178 0.77779 0.92130 0.94147 0.90336 0.88411 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.05 71.98 0.65 -2.79 16 2 C -0.09 -2.62 2.81 -10.79 -0.03 -2.65 16 3 C -0.14 -3.90 8.70 71.98 0.63 -3.27 16 4 C 0.10 3.92 2.23 30.63 0.07 3.99 16 5 H 0.04 1.67 7.82 -2.38 -0.02 1.66 16 6 C -0.12 -5.29 4.08 30.68 0.13 -5.16 16 7 C 0.24 11.88 0.67 -11.42 -0.01 11.87 16 8 O -0.60 -31.42 11.93 -148.98 -1.78 -33.20 16 9 C -0.56 -30.89 8.26 25.60 0.21 -30.68 16 10 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 11 C 0.03 1.52 5.22 84.65 0.44 1.96 16 12 N -0.91 -48.83 9.75 21.45 0.21 -48.62 16 13 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 17 C -0.16 -7.66 4.85 30.68 0.15 -7.51 16 18 C 0.07 2.82 6.69 72.01 0.48 3.31 16 19 O -0.39 -15.18 9.06 -148.98 -1.35 -16.53 16 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.26 8.14 -2.38 -0.02 1.25 16 22 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 23 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.05 1.40 6.38 -2.39 -0.02 1.39 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.54 7.68 -2.39 -0.02 1.52 16 27 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 3.03 6.31 -2.39 -0.02 3.01 16 29 H 0.37 20.13 7.18 -74.06 -0.53 19.60 16 30 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 4.04 6.18 -2.38 -0.01 4.03 16 33 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.04 1.58 7.82 -2.39 -0.02 1.57 16 Total: -1.00 -57.00 264.25 2.37 -54.63 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: 0.54 Total: 29.91 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 2.72 Total: -30.93 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.21 Total: -48.62 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -3.13 Total: -49.73 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -57.00 2.37 -54.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879070.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.564 kcal (2) G-P(sol) polarization free energy of solvation -57.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds