Wall clock time and date at job start Mon Mar 30 2020 02:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.52990 * 109.49196 * 62.36816 * 3 2 1 5 5 C 1.53090 * 109.47833 * 182.39784 * 3 2 1 6 6 C 1.53187 * 109.16193 * 177.58724 * 5 3 2 7 7 O 1.42903 * 109.54137 * 183.06356 * 6 5 3 8 8 C 1.50697 * 109.54033 * 62.88689 * 6 5 3 9 9 H 1.08001 * 119.99907 * 242.91307 * 8 6 5 10 10 C 1.37880 * 120.00091 * 62.91516 * 8 6 5 11 11 N 1.31518 * 119.99950 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 119.99861 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47004 * 269.99360 * 12 10 8 14 14 H 1.48493 * 109.47505 * 29.99666 * 12 10 8 15 15 H 1.48501 * 109.47128 * 149.99807 * 12 10 8 16 16 C 1.53177 * 109.03700 * 303.01915 * 6 5 3 17 17 C 1.53096 * 109.16214 * 56.98038 * 16 6 5 18 18 O 1.42901 * 109.47916 * 302.33610 * 3 2 1 19 19 H 1.09007 * 109.47193 * 293.79749 * 1 2 3 20 20 H 1.08991 * 109.47019 * 53.79785 * 1 2 3 21 21 H 1.08996 * 109.47062 * 173.80379 * 1 2 3 22 22 H 1.08999 * 109.47160 * 239.99782 * 2 1 3 23 23 H 1.09005 * 109.47174 * 120.00016 * 2 1 3 24 24 H 1.09003 * 109.47484 * 196.75523 * 4 3 2 25 25 H 1.08999 * 109.47749 * 316.75278 * 4 3 2 26 26 H 1.09002 * 109.47235 * 76.75341 * 4 3 2 27 27 H 1.09004 * 109.52651 * 57.68536 * 5 3 2 28 28 H 1.08991 * 109.57621 * 297.52642 * 5 3 2 29 29 H 0.96700 * 113.99733 * 179.82321 * 7 6 5 30 30 H 0.96993 * 119.99693 * 179.97438 * 11 10 8 31 31 H 1.08992 * 109.52376 * 176.88237 * 16 6 5 32 32 H 1.08999 * 109.52457 * 297.07787 * 16 6 5 33 33 H 1.09002 * 109.48080 * 182.41155 * 17 16 6 34 34 H 1.08996 * 109.48068 * 62.37457 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5795 2.1468 1.2777 5 6 3.5697 1.4431 -0.0604 6 6 4.0700 2.8898 -0.1209 7 8 5.4932 2.8984 -0.2494 8 6 3.6731 3.6135 1.1399 9 1 3.0034 4.4592 1.0891 10 6 4.1651 3.1959 2.3584 11 7 4.9804 2.1658 2.4204 12 14 3.6738 4.0935 3.9212 13 1 4.6398 5.1897 4.1870 14 1 2.3120 4.6625 3.7580 15 1 3.6793 3.1418 5.0612 16 6 3.4401 3.5860 -1.3312 17 6 1.9154 3.5026 -1.2218 18 8 1.5195 2.1320 -1.1383 19 1 -0.3634 0.4147 0.9403 20 1 -0.3633 0.6069 -0.8292 21 1 -0.3633 -1.0216 -0.1109 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6755 3.2254 1.1529 25 1 0.5377 1.8953 1.4760 26 1 2.1974 1.8215 2.1148 27 1 3.8994 0.9063 -0.9499 28 1 3.9705 0.9560 0.8285 29 1 5.8784 3.7841 -0.2963 30 1 5.3267 1.8723 3.2775 31 1 3.7472 4.6316 -1.3505 32 1 3.7671 3.0923 -2.2464 33 1 1.4622 3.9589 -2.1019 34 1 1.5857 4.0313 -0.3275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:42 Heat of formation + Delta-G solvation = -98.330381 kcal Electronic energy + Delta-G solvation = -16203.520833 eV Core-core repulsion = 13715.506658 eV Total energy + Delta-G solvation = -2488.014175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.34082 -35.50806 -33.68749 -32.31642 -30.60758 -29.11450 -26.85277 -25.52994 -22.96481 -22.56318 -19.71801 -18.44558 -16.74316 -15.45956 -15.35823 -14.57776 -14.13880 -13.70356 -13.40295 -13.31771 -12.89039 -12.37359 -12.23362 -11.55576 -11.30663 -11.15477 -11.04333 -10.81724 -10.68203 -10.48687 -10.33468 -10.08773 -9.96149 -9.78544 -9.33315 -8.81896 -8.40358 -8.35902 -8.09359 -5.99910 -4.10793 3.22898 3.31535 3.33559 4.34678 4.65469 5.20976 5.44830 5.64925 5.81179 5.89519 6.00487 6.12001 6.21141 6.22465 6.34363 6.39568 6.44565 6.65665 6.70374 6.78369 6.81180 6.87543 6.98534 7.10049 7.20295 7.50503 7.67475 7.68492 7.87508 8.18683 8.33278 8.77762 9.36179 9.57035 10.99946 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.015110 C = 0.012636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.155383 B = 1852.683749 C = 2215.441782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.132 3.868 4 C -0.165 4.165 5 C -0.113 4.113 6 C 0.251 3.749 7 O -0.561 6.561 8 C -0.551 4.551 9 H 0.057 0.943 10 C 0.083 3.917 11 N -0.853 5.853 12 Si 0.874 3.126 13 H -0.281 1.281 14 H -0.272 1.272 15 H -0.285 1.285 16 C -0.174 4.174 17 C 0.072 3.928 18 O -0.389 6.389 19 H 0.053 0.947 20 H 0.060 0.940 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.100 0.900 29 H 0.348 0.652 30 H 0.259 0.741 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.590 -0.253 -3.151 6.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C 0.093 3.907 4 C -0.221 4.221 5 C -0.151 4.151 6 C 0.212 3.788 7 O -0.364 6.364 8 C -0.588 4.588 9 H 0.075 0.925 10 C -0.122 4.122 11 N -0.489 5.489 12 Si 0.701 3.299 13 H -0.207 1.207 14 H -0.197 1.197 15 H -0.211 1.211 16 C -0.213 4.213 17 C -0.005 4.005 18 O -0.309 6.309 19 H 0.072 0.928 20 H 0.079 0.921 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.041 0.959 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.118 0.882 29 H 0.192 0.808 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.693 -1.143 -3.139 6.601 hybrid contribution 0.097 1.294 1.105 1.704 sum -5.597 0.150 -2.034 5.957 Atomic orbital electron populations 1.21736 0.96183 1.00295 1.02130 1.21485 0.95793 0.95455 1.01675 1.21271 0.93087 0.90636 0.85664 1.22780 0.97502 1.04070 0.97777 1.21910 0.92991 0.98301 1.01914 1.18652 0.78518 0.91920 0.89760 1.86485 1.22531 1.30992 1.96398 1.21438 1.30205 1.15423 0.91767 0.92505 1.24897 0.94489 0.94435 0.98376 1.70008 1.29994 1.24157 1.24752 0.86907 0.79203 0.79957 0.83814 1.20656 1.19653 1.21073 1.22878 0.96925 1.00732 1.00716 1.22359 0.94275 0.83586 1.00258 1.87733 1.73401 1.23177 1.46614 0.92812 0.92100 0.93906 0.92318 0.91217 0.89072 0.95861 0.91391 0.95285 0.88205 0.80843 0.93088 0.92563 0.93375 0.91303 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.42 37.16 0.35 -1.97 16 2 C -0.11 -1.95 5.19 -26.73 -0.14 -2.09 16 3 C 0.13 2.80 0.79 -90.58 -0.07 2.73 16 4 C -0.16 -3.56 7.09 37.15 0.26 -3.29 16 5 C -0.11 -2.73 4.08 -26.59 -0.11 -2.84 16 6 C 0.25 6.08 0.75 -91.58 -0.07 6.02 16 7 O -0.56 -14.32 12.23 -35.23 -0.43 -14.75 16 8 C -0.55 -13.83 4.46 -34.44 -0.15 -13.99 16 9 H 0.06 1.42 6.27 -52.49 -0.33 1.09 16 10 C 0.08 2.16 3.61 -17.82 -0.06 2.09 16 11 N -0.85 -23.38 10.97 55.43 0.61 -22.77 16 12 Si 0.87 20.18 29.49 -169.99 -5.01 15.17 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 16 C -0.17 -3.67 5.23 -26.59 -0.14 -3.81 16 17 C 0.07 1.42 6.43 37.21 0.24 1.66 16 18 O -0.39 -8.15 9.36 -35.23 -0.33 -8.48 16 19 H 0.05 0.84 6.48 -51.93 -0.34 0.50 16 20 H 0.06 1.00 7.43 -51.93 -0.39 0.61 16 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.09 2.07 3.34 -51.93 -0.17 1.89 16 25 H 0.02 0.44 5.96 -51.93 -0.31 0.13 16 26 H 0.07 1.60 6.35 -51.93 -0.33 1.27 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.10 2.66 6.22 -51.93 -0.32 2.34 16 29 H 0.35 7.85 9.04 45.56 0.41 8.26 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 5.14 -51.93 -0.27 0.91 16 LS Contribution 251.95 15.07 3.80 3.80 Total: -1.00 -27.83 251.95 -5.40 -33.23 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.14 Total: 9.31 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 0.11 Total: -15.50 kcal Atomic # 7 Polarization: -23.38 SS G_CDS: 0.61 Total: -22.77 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.76 Total: -23.23 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.01 Total: 15.17 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.83 -5.40 -33.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.104 kcal (2) G-P(sol) polarization free energy of solvation -27.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds