Wall clock time and date at job start Mon Mar 30 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47080 * 2 1 4 4 C 1.52990 * 109.49196 * 62.36816 * 3 2 1 5 5 C 1.53090 * 109.47833 * 182.39784 * 3 2 1 6 6 C 1.53187 * 109.16193 * 177.58724 * 5 3 2 7 7 O 1.42903 * 109.54137 * 183.06356 * 6 5 3 8 8 C 1.50697 * 109.54033 * 62.88689 * 6 5 3 9 9 H 1.08001 * 119.99907 * 242.91307 * 8 6 5 10 10 C 1.37880 * 120.00091 * 62.91516 * 8 6 5 11 11 N 1.31518 * 119.99950 * 359.97438 * 10 8 6 12 12 Si 1.86794 * 119.99861 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47004 * 269.99360 * 12 10 8 14 14 H 1.48493 * 109.47505 * 29.99666 * 12 10 8 15 15 H 1.48501 * 109.47128 * 149.99807 * 12 10 8 16 16 C 1.53177 * 109.03700 * 303.01915 * 6 5 3 17 17 C 1.53096 * 109.16214 * 56.98038 * 16 6 5 18 18 O 1.42901 * 109.47916 * 302.33610 * 3 2 1 19 19 H 1.09007 * 109.47193 * 293.79749 * 1 2 3 20 20 H 1.08991 * 109.47019 * 53.79785 * 1 2 3 21 21 H 1.08996 * 109.47062 * 173.80379 * 1 2 3 22 22 H 1.08999 * 109.47160 * 239.99782 * 2 1 3 23 23 H 1.09005 * 109.47174 * 120.00016 * 2 1 3 24 24 H 1.09003 * 109.47484 * 196.75523 * 4 3 2 25 25 H 1.08999 * 109.47749 * 316.75278 * 4 3 2 26 26 H 1.09002 * 109.47235 * 76.75341 * 4 3 2 27 27 H 1.09004 * 109.52651 * 57.68536 * 5 3 2 28 28 H 1.08991 * 109.57621 * 297.52642 * 5 3 2 29 29 H 0.96700 * 113.99733 * 179.82321 * 7 6 5 30 30 H 0.96993 * 119.99693 * 179.97438 * 11 10 8 31 31 H 1.08992 * 109.52376 * 176.88237 * 16 6 5 32 32 H 1.08999 * 109.52457 * 297.07787 * 16 6 5 33 33 H 1.09002 * 109.48080 * 182.41155 * 17 16 6 34 34 H 1.08996 * 109.48068 * 62.37457 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5795 2.1468 1.2777 5 6 3.5697 1.4431 -0.0604 6 6 4.0700 2.8898 -0.1209 7 8 5.4932 2.8984 -0.2494 8 6 3.6731 3.6135 1.1399 9 1 3.0034 4.4592 1.0891 10 6 4.1651 3.1959 2.3584 11 7 4.9804 2.1658 2.4204 12 14 3.6738 4.0935 3.9212 13 1 4.6398 5.1897 4.1870 14 1 2.3120 4.6625 3.7580 15 1 3.6793 3.1418 5.0612 16 6 3.4401 3.5860 -1.3312 17 6 1.9154 3.5026 -1.2218 18 8 1.5195 2.1320 -1.1383 19 1 -0.3634 0.4147 0.9403 20 1 -0.3633 0.6069 -0.8292 21 1 -0.3633 -1.0216 -0.1109 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6755 3.2254 1.1529 25 1 0.5377 1.8953 1.4760 26 1 2.1974 1.8215 2.1148 27 1 3.8994 0.9063 -0.9499 28 1 3.9705 0.9560 0.8285 29 1 5.8784 3.7841 -0.2963 30 1 5.3267 1.8723 3.2775 31 1 3.7472 4.6316 -1.3505 32 1 3.7671 3.0923 -2.2464 33 1 1.4622 3.9589 -2.1019 34 1 1.5857 4.0313 -0.3275 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:41 Heat of formation + Delta-G solvation = -117.520940 kcal Electronic energy + Delta-G solvation = -16204.352998 eV Core-core repulsion = 13715.506658 eV Total energy + Delta-G solvation = -2488.846340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.05928 -37.35906 -35.26208 -34.25772 -32.44218 -30.66531 -28.64862 -27.41951 -24.51608 -24.26200 -21.44048 -20.22470 -18.65067 -17.17258 -17.11560 -16.41979 -15.97455 -15.36271 -15.08146 -14.90399 -14.50702 -14.16319 -13.85993 -13.37082 -13.07193 -12.75713 -12.72572 -12.53942 -12.35896 -12.26853 -11.97036 -11.87575 -11.74909 -11.42570 -11.02746 -10.64651 -10.31249 -10.12268 -10.01464 -7.98499 -6.13092 1.38709 1.43880 1.49523 2.42842 3.06015 3.22793 3.81874 4.15127 4.24509 4.35233 4.40933 4.51094 4.59707 4.63855 4.78969 4.87870 5.01616 5.03276 5.09957 5.16003 5.20886 5.25966 5.35028 5.38457 5.58068 5.62991 5.72875 5.90268 5.94336 6.25509 6.62344 6.80658 7.42845 7.64356 9.01094 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028415 B = 0.015110 C = 0.012636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.155383 B = 1852.683749 C = 2215.441782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.134 3.866 4 C -0.157 4.157 5 C -0.111 4.111 6 C 0.235 3.765 7 O -0.582 6.582 8 C -0.543 4.543 9 H 0.059 0.941 10 C 0.046 3.954 11 N -0.885 5.885 12 Si 0.924 3.076 13 H -0.281 1.281 14 H -0.262 1.262 15 H -0.289 1.289 16 C -0.168 4.168 17 C 0.069 3.931 18 O -0.389 6.389 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.061 0.939 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.017 0.983 28 H 0.069 0.931 29 H 0.357 0.643 30 H 0.255 0.745 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 0.307 -3.549 8.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.095 3.905 4 C -0.214 4.214 5 C -0.149 4.149 6 C 0.196 3.804 7 O -0.387 6.387 8 C -0.581 4.581 9 H 0.077 0.923 10 C -0.156 4.156 11 N -0.523 5.523 12 Si 0.750 3.250 13 H -0.207 1.207 14 H -0.186 1.186 15 H -0.215 1.215 16 C -0.206 4.206 17 C -0.007 4.007 18 O -0.309 6.309 19 H 0.074 0.926 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.088 0.912 29 H 0.202 0.798 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.370 -0.564 -3.546 8.198 hybrid contribution 0.655 1.129 1.188 1.765 sum -6.715 0.565 -2.358 7.139 Atomic orbital electron populations 1.21675 0.93839 1.01986 1.02060 1.21506 0.97818 0.93462 1.01758 1.21245 0.91087 0.92414 0.85744 1.22633 0.98400 1.03262 0.97062 1.21887 0.95347 0.97981 0.99735 1.18888 0.78103 0.92315 0.91052 1.86461 1.23647 1.32037 1.96522 1.21582 1.29440 1.14974 0.92130 0.92301 1.25432 0.94539 0.94878 1.00749 1.70147 1.31496 1.25688 1.24948 0.86108 0.79215 0.78770 0.80876 1.20736 1.18638 1.21486 1.22779 0.97895 1.01024 0.98952 1.22518 0.93301 0.83150 1.01740 1.87745 1.73102 1.23813 1.46260 0.92613 0.92398 0.91342 0.92069 0.91430 0.90115 0.93536 0.93799 0.96452 0.91242 0.79835 0.93553 0.91251 0.93476 0.87777 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.42 71.98 0.68 -3.32 16 2 C -0.11 -3.80 5.19 30.60 0.16 -3.64 16 3 C 0.13 5.53 0.79 -10.77 -0.01 5.53 16 4 C -0.16 -6.57 7.09 71.98 0.51 -6.06 16 5 C -0.11 -5.40 4.08 30.69 0.13 -5.27 16 6 C 0.24 11.35 0.75 -11.42 -0.01 11.34 16 7 O -0.58 -29.94 12.23 -148.98 -1.82 -31.76 16 8 C -0.54 -26.99 4.46 25.60 0.11 -26.88 16 9 H 0.06 2.87 6.27 -2.91 -0.02 2.85 16 10 C 0.05 2.40 3.61 84.65 0.31 2.70 16 11 N -0.89 -49.33 10.97 21.45 0.24 -49.09 16 12 Si 0.92 41.16 29.49 68.60 2.02 43.18 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 16 C -0.17 -6.82 5.23 30.69 0.16 -6.66 16 17 C 0.07 2.55 6.43 72.01 0.46 3.01 16 18 O -0.39 -15.43 9.36 -148.98 -1.39 -16.82 16 19 H 0.05 1.57 6.48 -2.38 -0.02 1.56 16 20 H 0.06 1.71 7.43 -2.39 -0.02 1.69 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 24 H 0.08 3.53 3.34 -2.39 -0.01 3.52 16 25 H 0.05 1.70 5.96 -2.39 -0.01 1.68 16 26 H 0.04 2.04 6.35 -2.39 -0.02 2.02 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 3.80 6.22 -2.39 -0.01 3.78 16 29 H 0.36 16.17 9.04 -74.06 -0.67 15.50 16 30 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.58 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.05 2.05 5.14 -2.39 -0.01 2.04 16 Total: -1.00 -58.14 251.95 1.97 -56.17 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.43 Total: 27.57 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 2.50 Total: -29.25 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.24 Total: -49.09 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -3.22 Total: -48.58 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.02 Total: 43.18 kcal Total: -58.14 1.97 -56.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.348 kcal (2) G-P(sol) polarization free energy of solvation -58.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds