Wall clock time and date at job start Mon Mar 30 2020 02:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47373 * 2 1 4 4 C 1.53003 * 109.47896 * 299.11071 * 3 2 1 5 5 C 1.53093 * 109.48061 * 179.08903 * 3 2 1 6 6 C 1.53177 * 109.15926 * 182.40822 * 5 3 2 7 7 O 1.42903 * 109.54392 * 176.93529 * 6 5 3 8 8 C 1.50696 * 109.54614 * 297.11131 * 6 5 3 9 9 H 1.08004 * 120.00438 * 115.93817 * 8 6 5 10 10 C 1.37879 * 120.00047 * 295.93823 * 8 6 5 11 11 N 1.31517 * 119.99936 * 354.77950 * 10 8 6 12 12 Si 1.86804 * 120.00132 * 174.77995 * 10 8 6 13 13 H 1.48504 * 109.46816 * 269.99962 * 12 10 8 14 14 H 1.48494 * 109.47128 * 149.99916 * 12 10 8 15 15 H 1.48498 * 109.47137 * 29.99644 * 12 10 8 16 16 C 1.53178 * 109.11098 * 57.02432 * 6 5 3 17 17 C 1.53282 * 109.06464 * 303.05674 * 16 6 5 18 18 O 1.42898 * 109.47974 * 59.14303 * 3 2 1 19 19 H 1.09008 * 109.46812 * 306.21510 * 1 2 3 20 20 H 1.09006 * 109.47027 * 66.21426 * 1 2 3 21 21 H 1.08998 * 109.47339 * 186.21197 * 1 2 3 22 22 H 1.08998 * 109.47067 * 239.99793 * 2 1 3 23 23 H 1.09001 * 109.47407 * 120.00008 * 2 1 3 24 24 H 1.08998 * 109.47130 * 284.52545 * 4 3 2 25 25 H 1.09000 * 109.46892 * 44.52493 * 4 3 2 26 26 H 1.09000 * 109.46950 * 164.52747 * 4 3 2 27 27 H 1.08992 * 109.52479 * 62.50468 * 5 3 2 28 28 H 1.09000 * 109.57571 * 302.34202 * 5 3 2 29 29 H 0.96699 * 114.00630 * 175.31710 * 7 6 5 30 30 H 0.96999 * 119.99678 * 0.80911 * 11 10 8 31 31 H 1.09003 * 109.52094 * 62.88032 * 16 6 5 32 32 H 1.09004 * 109.52090 * 183.06669 * 16 6 5 33 33 H 1.09002 * 109.45230 * 297.55851 * 17 16 6 34 34 H 1.09001 * 109.45447 * 177.54949 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5485 2.1575 -1.2603 5 6 3.5708 1.4428 0.0229 6 6 4.0724 2.8888 0.0836 7 8 5.4984 2.8966 0.1773 8 6 3.6451 3.6233 -1.1609 9 1 2.9622 4.4570 -1.0883 10 6 4.1258 3.2312 -2.3922 11 7 5.0350 2.2843 -2.4720 12 14 3.4857 4.0448 -3.9471 13 1 2.3044 3.2965 -4.4471 14 1 4.5498 4.0393 -4.9828 15 1 3.0938 5.4455 -3.6475 16 6 3.4743 3.5759 1.3150 17 6 1.9455 3.4920 1.2420 18 8 1.5475 2.1221 1.1565 19 1 -0.3633 0.6072 0.8292 20 1 -0.3633 0.4145 -0.9404 21 1 -0.3634 -1.0216 0.1112 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.1308 1.8224 -2.1186 25 1 0.4959 1.9255 -1.4224 26 1 1.6688 3.2338 -1.1376 27 1 3.9487 0.9637 -0.8802 28 1 3.9230 0.8980 0.8989 29 1 5.8898 3.7803 0.1477 30 1 5.3588 1.8536 -1.6654 31 1 3.8236 3.0744 2.2176 32 1 3.7833 4.6210 1.3351 33 1 1.5942 4.0283 0.3605 34 1 1.5141 3.9407 2.1368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:43 Heat of formation + Delta-G solvation = -103.303650 kcal Electronic energy + Delta-G solvation = -16251.867156 eV Core-core repulsion = 13763.637324 eV Total energy + Delta-G solvation = -2488.229832 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.53210 -35.86610 -33.81293 -32.29881 -30.69223 -29.17928 -27.03286 -25.10685 -23.11093 -22.59837 -19.93374 -18.61418 -17.06439 -15.86396 -15.43002 -14.56312 -13.96723 -13.71543 -13.50503 -13.40642 -13.14956 -12.60014 -12.30826 -11.61248 -11.46755 -11.30104 -10.89276 -10.81762 -10.53653 -10.46042 -10.34110 -10.15649 -10.10816 -9.92917 -9.41911 -9.03675 -8.57268 -8.34468 -7.97070 -6.28566 -4.09221 3.37972 3.39630 3.54939 4.46472 4.53892 5.24101 5.33134 5.55560 5.71182 5.78741 5.88515 5.98804 6.07061 6.12157 6.23723 6.31699 6.34806 6.50980 6.56096 6.66632 6.70997 6.74631 6.83615 6.94892 7.06833 7.20447 7.44568 7.60206 8.00058 8.14549 8.31690 8.85600 9.10809 9.65103 11.05453 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.015376 C = 0.012716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.861514 B = 1820.567951 C = 2201.396177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C 0.135 3.865 4 C -0.168 4.168 5 C -0.119 4.119 6 C 0.233 3.767 7 O -0.581 6.581 8 C -0.630 4.630 9 H 0.052 0.948 10 C 0.040 3.960 11 N -0.895 5.895 12 Si 1.051 2.949 13 H -0.284 1.284 14 H -0.285 1.285 15 H -0.289 1.289 16 C -0.166 4.166 17 C 0.071 3.929 18 O -0.387 6.387 19 H 0.060 0.940 20 H 0.055 0.945 21 H 0.043 0.957 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.026 0.974 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.359 0.641 30 H 0.293 0.707 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -0.116 3.613 7.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C 0.096 3.904 4 C -0.225 4.225 5 C -0.158 4.158 6 C 0.195 3.805 7 O -0.385 6.385 8 C -0.668 4.668 9 H 0.070 0.930 10 C -0.169 4.169 11 N -0.531 5.531 12 Si 0.880 3.120 13 H -0.211 1.211 14 H -0.211 1.211 15 H -0.215 1.215 16 C -0.204 4.204 17 C -0.005 4.005 18 O -0.307 6.307 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.115 0.885 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.204 0.796 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.233 -0.874 2.150 6.651 hybrid contribution 0.164 0.810 1.454 1.672 sum -6.069 -0.063 3.604 7.059 Atomic orbital electron populations 1.21739 0.95918 1.00441 1.02233 1.21497 0.96103 0.95236 1.01699 1.21211 0.92438 0.91040 0.85729 1.22834 0.97523 1.04594 0.97538 1.22026 0.94387 0.98192 1.01148 1.18895 0.78209 0.91924 0.91503 1.86348 1.22874 1.32816 1.96493 1.22183 1.33005 1.18701 0.92886 0.92988 1.25521 0.94418 0.96148 1.00812 1.70600 1.24602 1.22648 1.35279 0.83835 0.76343 0.75694 0.76147 1.21097 1.21062 1.21487 1.22760 0.96831 1.00730 1.00054 1.22412 0.94140 0.83536 1.00439 1.87743 1.74520 1.23555 1.44859 0.92088 0.92640 0.93761 0.91175 0.92278 0.91523 0.95527 0.88520 0.90297 0.94555 0.79597 0.89280 0.93466 0.92370 0.92172 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.38 37.16 0.35 -1.94 16 2 C -0.11 -1.95 5.20 -26.73 -0.14 -2.09 16 3 C 0.13 2.83 0.79 -90.57 -0.07 2.76 16 4 C -0.17 -3.62 7.06 37.16 0.26 -3.36 16 5 C -0.12 -2.82 3.92 -26.59 -0.10 -2.93 16 6 C 0.23 5.62 0.72 -91.59 -0.07 5.55 16 7 O -0.58 -14.48 11.11 -35.23 -0.39 -14.87 16 8 C -0.63 -15.94 4.41 -34.44 -0.15 -16.09 16 9 H 0.05 1.32 6.19 -52.48 -0.33 1.00 16 10 C 0.04 1.06 3.78 -17.82 -0.07 1.00 16 11 N -0.89 -25.60 12.83 55.43 0.71 -24.89 16 12 Si 1.05 23.94 29.61 -169.99 -5.03 18.91 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 16 C -0.17 -3.50 5.27 -26.49 -0.14 -3.64 16 17 C 0.07 1.41 6.43 37.30 0.24 1.65 16 18 O -0.39 -8.04 9.42 -35.23 -0.33 -8.37 16 19 H 0.06 0.98 7.48 -51.92 -0.39 0.59 16 20 H 0.05 0.86 6.47 -51.93 -0.34 0.52 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 1.57 6.33 -51.93 -0.33 1.24 16 25 H 0.03 0.51 5.93 -51.93 -0.31 0.20 16 26 H 0.10 2.18 3.25 -51.93 -0.17 2.02 16 27 H 0.08 2.04 5.99 -51.93 -0.31 1.73 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.36 8.10 9.02 45.56 0.41 8.51 16 30 H 0.29 8.55 4.82 -40.82 -0.20 8.35 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.22 5.16 -51.93 -0.27 0.95 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 248.87 15.07 3.75 3.75 Total: -1.00 -28.15 248.87 -5.16 -33.31 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -3.97 Total: 11.26 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 0.11 Total: -19.10 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.71 Total: -24.89 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.72 Total: -23.24 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.03 Total: 18.91 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -28.15 -5.16 -33.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.991 kcal (2) G-P(sol) polarization free energy of solvation -28.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds