Wall clock time and date at job start Mon Mar 30 2020 02:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47373 * 2 1 4 4 C 1.53003 * 109.47896 * 299.11071 * 3 2 1 5 5 C 1.53093 * 109.48061 * 179.08903 * 3 2 1 6 6 C 1.53177 * 109.15926 * 182.40822 * 5 3 2 7 7 O 1.42903 * 109.54392 * 176.93529 * 6 5 3 8 8 C 1.50696 * 109.54614 * 297.11131 * 6 5 3 9 9 H 1.08004 * 120.00438 * 115.93817 * 8 6 5 10 10 C 1.37879 * 120.00047 * 295.93823 * 8 6 5 11 11 N 1.31517 * 119.99936 * 354.77950 * 10 8 6 12 12 Si 1.86804 * 120.00132 * 174.77995 * 10 8 6 13 13 H 1.48504 * 109.46816 * 269.99962 * 12 10 8 14 14 H 1.48494 * 109.47128 * 149.99916 * 12 10 8 15 15 H 1.48498 * 109.47137 * 29.99644 * 12 10 8 16 16 C 1.53178 * 109.11098 * 57.02432 * 6 5 3 17 17 C 1.53282 * 109.06464 * 303.05674 * 16 6 5 18 18 O 1.42898 * 109.47974 * 59.14303 * 3 2 1 19 19 H 1.09008 * 109.46812 * 306.21510 * 1 2 3 20 20 H 1.09006 * 109.47027 * 66.21426 * 1 2 3 21 21 H 1.08998 * 109.47339 * 186.21197 * 1 2 3 22 22 H 1.08998 * 109.47067 * 239.99793 * 2 1 3 23 23 H 1.09001 * 109.47407 * 120.00008 * 2 1 3 24 24 H 1.08998 * 109.47130 * 284.52545 * 4 3 2 25 25 H 1.09000 * 109.46892 * 44.52493 * 4 3 2 26 26 H 1.09000 * 109.46950 * 164.52747 * 4 3 2 27 27 H 1.08992 * 109.52479 * 62.50468 * 5 3 2 28 28 H 1.09000 * 109.57571 * 302.34202 * 5 3 2 29 29 H 0.96699 * 114.00630 * 175.31710 * 7 6 5 30 30 H 0.96999 * 119.99678 * 0.80911 * 11 10 8 31 31 H 1.09003 * 109.52094 * 62.88032 * 16 6 5 32 32 H 1.09004 * 109.52090 * 183.06669 * 16 6 5 33 33 H 1.09002 * 109.45230 * 297.55851 * 17 16 6 34 34 H 1.09001 * 109.45447 * 177.54949 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5485 2.1575 -1.2603 5 6 3.5708 1.4428 0.0229 6 6 4.0724 2.8888 0.0836 7 8 5.4984 2.8966 0.1773 8 6 3.6451 3.6233 -1.1609 9 1 2.9622 4.4570 -1.0883 10 6 4.1258 3.2312 -2.3922 11 7 5.0350 2.2843 -2.4720 12 14 3.4857 4.0448 -3.9471 13 1 2.3044 3.2965 -4.4471 14 1 4.5498 4.0393 -4.9828 15 1 3.0938 5.4455 -3.6475 16 6 3.4743 3.5759 1.3150 17 6 1.9455 3.4920 1.2420 18 8 1.5475 2.1221 1.1565 19 1 -0.3633 0.6072 0.8292 20 1 -0.3633 0.4145 -0.9404 21 1 -0.3634 -1.0216 0.1112 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 2.1308 1.8224 -2.1186 25 1 0.4959 1.9255 -1.4224 26 1 1.6688 3.2338 -1.1376 27 1 3.9487 0.9637 -0.8802 28 1 3.9230 0.8980 0.8989 29 1 5.8898 3.7803 0.1477 30 1 5.3588 1.8536 -1.6654 31 1 3.8236 3.0744 2.2176 32 1 3.7833 4.6210 1.3351 33 1 1.5942 4.0283 0.3605 34 1 1.5141 3.9407 2.1368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879086.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:43 Heat of formation + Delta-G solvation = -122.608841 kcal Electronic energy + Delta-G solvation = -16252.704292 eV Core-core repulsion = 13763.637324 eV Total energy + Delta-G solvation = -2489.066968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.25847 -37.71309 -35.37848 -34.24960 -32.52378 -30.72849 -28.81981 -27.01365 -24.66725 -24.31058 -21.66606 -20.39873 -18.97319 -17.64363 -17.09497 -16.35836 -15.72904 -15.43370 -15.18219 -15.05851 -14.70182 -14.45812 -13.89672 -13.47821 -13.03097 -12.89351 -12.58714 -12.51179 -12.27576 -12.11327 -12.08879 -11.94449 -11.91285 -11.50328 -11.08929 -10.84841 -10.33606 -10.27416 -9.92699 -8.36899 -6.17076 1.54248 1.59038 1.74796 2.58808 2.94519 3.27520 3.60795 4.03778 4.12242 4.20699 4.28914 4.40728 4.48313 4.49851 4.66171 4.80258 4.84962 4.92797 5.01136 5.04069 5.08606 5.15918 5.20829 5.27846 5.40406 5.51386 5.59409 5.84463 6.00551 6.29097 6.49001 6.73967 7.22185 7.64051 8.95156 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.015376 C = 0.012716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.861514 B = 1820.567951 C = 2201.396177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C 0.135 3.865 4 C -0.161 4.161 5 C -0.117 4.117 6 C 0.218 3.782 7 O -0.596 6.596 8 C -0.617 4.617 9 H 0.053 0.947 10 C 0.002 3.998 11 N -0.928 5.928 12 Si 1.086 2.914 13 H -0.273 1.273 14 H -0.293 1.293 15 H -0.270 1.270 16 C -0.161 4.161 17 C 0.069 3.931 18 O -0.386 6.386 19 H 0.058 0.942 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.365 0.635 30 H 0.279 0.721 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.036 0.412 4.104 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.096 3.904 4 C -0.218 4.218 5 C -0.155 4.155 6 C 0.179 3.821 7 O -0.402 6.402 8 C -0.654 4.654 9 H 0.071 0.929 10 C -0.202 4.202 11 N -0.566 5.566 12 Si 0.910 3.090 13 H -0.198 1.198 14 H -0.220 1.220 15 H -0.195 1.195 16 C -0.199 4.199 17 C -0.007 4.007 18 O -0.306 6.306 19 H 0.077 0.923 20 H 0.075 0.925 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.104 0.896 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.211 0.789 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.099 -0.329 2.659 8.531 hybrid contribution 0.772 0.661 1.360 1.698 sum -7.327 0.332 4.019 8.363 Atomic orbital electron populations 1.21684 0.93589 1.02152 1.02160 1.21523 0.98112 0.93178 1.01842 1.21224 0.90519 0.92854 0.85774 1.22689 0.98592 1.03734 0.96747 1.22021 0.96620 0.97680 0.99212 1.19136 0.77879 0.92432 0.92616 1.86338 1.23708 1.33553 1.96585 1.22318 1.31827 1.18015 0.93254 0.92925 1.26550 0.94030 0.95904 1.03679 1.70705 1.26799 1.24562 1.34524 0.83378 0.76074 0.76110 0.73427 1.19818 1.21973 1.19509 1.22684 0.97951 1.00868 0.98368 1.22563 0.93030 0.83163 1.01963 1.87758 1.74214 1.24104 1.44485 0.92335 0.92484 0.91184 0.91419 0.91877 0.94089 0.93070 0.89606 0.93204 0.95317 0.78882 0.90807 0.93452 0.91374 0.92642 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.38 71.98 0.68 -3.26 16 2 C -0.11 -3.77 5.20 30.59 0.16 -3.61 16 3 C 0.14 5.53 0.79 -10.76 -0.01 5.52 16 4 C -0.16 -6.71 7.06 71.98 0.51 -6.20 16 5 C -0.12 -5.57 3.92 30.68 0.12 -5.45 16 6 C 0.22 10.44 0.72 -11.42 -0.01 10.43 16 7 O -0.60 -30.10 11.11 -148.98 -1.65 -31.76 16 8 C -0.62 -30.87 4.41 25.60 0.11 -30.75 16 9 H 0.05 2.60 6.19 -2.91 -0.02 2.59 16 10 C 0.00 0.09 3.78 84.65 0.32 0.41 16 11 N -0.93 -54.13 12.83 21.45 0.28 -53.85 16 12 Si 1.09 47.69 29.61 68.60 2.03 49.72 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 16 C -0.16 -6.52 5.27 30.75 0.16 -6.36 16 17 C 0.07 2.54 6.43 72.08 0.46 3.00 16 18 O -0.39 -15.12 9.42 -148.98 -1.40 -16.52 16 19 H 0.06 1.69 7.48 -2.38 -0.02 1.68 16 20 H 0.06 1.59 6.47 -2.38 -0.02 1.57 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.04 1.90 6.33 -2.39 -0.02 1.89 16 25 H 0.05 1.85 5.93 -2.39 -0.01 1.83 16 26 H 0.09 3.74 3.25 -2.39 -0.01 3.73 16 27 H 0.05 2.65 5.99 -2.39 -0.01 2.64 16 28 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.36 16.66 9.02 -74.06 -0.67 15.99 16 30 H 0.28 16.79 4.82 -92.71 -0.45 16.35 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.10 5.16 -2.39 -0.01 2.09 16 34 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -59.32 248.87 2.51 -56.81 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.75 Total: 31.87 kcal Atomic # 6 Polarization: -38.78 SS G_CDS: 2.50 Total: -36.28 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.28 Total: -53.85 kcal Atomic # 8 Polarization: -45.22 SS G_CDS: -3.06 Total: -48.28 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -59.32 2.51 -56.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879086.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.800 kcal (2) G-P(sol) polarization free energy of solvation -59.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds