Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 C 1.52992 * 109.48186 * 60.02536 * 3 2 1 5 5 C 1.53097 * 109.48928 * 180.02562 * 3 2 1 6 6 C 1.53177 * 109.16144 * 177.59834 * 5 3 2 7 7 O 1.42897 * 109.54522 * 62.88857 * 6 5 3 8 8 C 1.50703 * 109.54200 * 183.15201 * 6 5 3 9 9 H 1.07998 * 120.00088 * 359.55812 * 8 6 5 10 10 C 1.37877 * 119.99759 * 179.55525 * 8 6 5 11 11 N 1.31508 * 120.00252 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99662 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47232 * 89.99981 * 12 10 8 14 14 H 1.48503 * 109.47190 * 210.00004 * 12 10 8 15 15 H 1.48498 * 109.47167 * 329.99581 * 12 10 8 16 16 C 1.53181 * 109.03863 * 303.01898 * 6 5 3 17 17 C 1.53093 * 109.16115 * 56.97903 * 16 6 5 18 18 O 1.42900 * 109.41767 * 302.39534 * 17 16 6 19 19 H 1.09000 * 109.47470 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47219 * 300.00564 * 1 2 3 21 21 H 1.09004 * 109.47559 * 59.99777 * 1 2 3 22 22 H 1.09000 * 109.47073 * 240.00186 * 2 1 3 23 23 H 1.09003 * 109.47040 * 120.00292 * 2 1 3 24 24 H 1.09004 * 109.47377 * 308.68027 * 4 3 2 25 25 H 1.09004 * 109.47709 * 68.67866 * 4 3 2 26 26 H 1.09007 * 109.47593 * 188.68244 * 4 3 2 27 27 H 1.08994 * 109.52288 * 297.50093 * 5 3 2 28 28 H 1.09000 * 109.52309 * 57.69756 * 5 3 2 29 29 H 0.96705 * 114.00267 * 180.44268 * 7 6 5 30 30 H 0.97003 * 119.99864 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.51875 * 297.07556 * 16 6 5 32 32 H 1.08994 * 109.52283 * 176.89098 * 16 6 5 33 33 H 1.08994 * 109.47674 * 62.37960 * 17 16 6 34 34 H 1.09000 * 109.47821 * 182.39565 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5306 2.1637 1.2494 5 6 3.5709 1.4429 -0.0006 6 6 4.0732 2.8887 -0.0613 7 8 3.6507 3.5911 1.1093 8 6 5.5782 2.8966 -0.1404 9 1 6.1238 1.9646 -0.1397 10 6 6.2583 4.0937 -0.2137 11 7 5.5939 5.2286 -0.2141 12 14 8.1237 4.1034 -0.3125 13 1 8.5443 4.0623 -1.7361 14 1 8.6466 5.3397 0.3226 15 1 8.6632 2.9160 0.3976 16 6 3.4912 3.5682 -1.3046 17 6 1.9633 3.4856 -1.2536 18 8 1.5642 2.1162 -1.1670 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8932 -0.5138 -0.8900 23 1 1.8932 -0.5139 0.8900 24 1 0.4517 2.0315 1.3309 25 1 2.0154 1.7473 2.1325 26 1 1.7618 3.2264 1.1752 27 1 3.9357 0.9685 0.9103 28 1 3.9350 0.8942 -0.8692 29 1 3.9288 4.5169 1.1343 30 1 6.0725 6.0707 -0.2661 31 1 3.8537 3.0623 -2.1995 32 1 3.7990 4.6135 -1.3262 33 1 1.5991 4.0263 -0.3802 34 1 1.5450 3.9300 -2.1567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085879091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = -110.376343 kcal Electronic energy + Delta-G solvation = -15890.821515 eV Core-core repulsion = 13402.284988 eV Total energy + Delta-G solvation = -2488.536527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.33358 -35.57299 -33.73707 -32.12530 -30.51278 -29.20822 -27.54952 -25.39466 -23.25034 -22.37354 -19.86103 -18.19531 -16.94322 -15.53663 -15.17027 -14.98283 -14.37635 -13.72461 -13.54607 -13.29287 -12.90264 -12.43322 -12.10792 -11.84743 -11.44441 -11.19637 -11.00410 -10.92678 -10.78394 -10.60032 -10.35535 -10.20475 -10.12672 -9.85021 -9.64648 -9.08028 -8.57145 -8.50818 -7.86569 -6.15702 -4.26911 3.22286 3.29609 3.33595 4.31436 4.56659 5.07215 5.35541 5.45280 5.67388 5.87706 5.97266 6.07160 6.13990 6.18211 6.21699 6.34062 6.38629 6.45727 6.52902 6.63126 6.65786 6.72131 6.82907 7.01193 7.23781 7.29841 7.59089 7.67328 7.92240 8.18593 8.19973 8.75312 9.40715 9.53117 10.86177 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.053081 B = 0.009708 C = 0.009286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.373592 B = 2883.588145 C = 3014.537657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.119 3.881 4 C -0.174 4.174 5 C -0.118 4.118 6 C 0.252 3.748 7 O -0.583 6.583 8 C -0.532 4.532 9 H 0.058 0.942 10 C 0.069 3.931 11 N -0.900 5.900 12 Si 0.898 3.102 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C -0.169 4.169 17 C 0.060 3.940 18 O -0.387 6.387 19 H 0.043 0.957 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.375 0.625 30 H 0.266 0.734 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -4.289 0.142 7.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.156 4.156 6 C 0.213 3.787 7 O -0.392 6.392 8 C -0.571 4.571 9 H 0.076 0.924 10 C -0.132 4.132 11 N -0.541 5.541 12 Si 0.726 3.274 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.208 4.208 17 C -0.017 4.017 18 O -0.307 6.307 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.707 -4.778 0.144 8.236 hybrid contribution 1.615 0.769 -0.132 1.793 sum -5.092 -4.009 0.012 6.481 Atomic orbital electron populations 1.21752 0.96018 1.00363 1.02316 1.21512 0.96080 0.95319 1.01727 1.21397 0.93703 0.91249 0.85681 1.22582 0.98584 1.04646 0.97258 1.22116 0.93535 0.98741 1.01160 1.18539 0.91559 0.86575 0.82011 1.86196 1.79092 1.29000 1.44921 1.21758 0.92161 0.92874 1.50265 0.92372 1.24989 0.98888 0.95453 0.93874 1.69590 1.35636 0.97515 1.51315 0.86495 0.85123 0.77590 0.78185 1.20615 1.21091 1.19878 1.22780 0.92687 1.05071 1.00214 1.22623 0.96768 0.82389 0.99891 1.87763 1.75271 1.24427 1.43250 0.93749 0.92702 0.92154 0.91947 0.91389 0.94201 0.92696 0.88721 0.92148 0.91887 0.77500 0.92396 0.93239 0.88316 0.93337 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.43 37.15 0.35 -1.75 16 2 C -0.11 -1.77 5.20 -26.74 -0.14 -1.91 16 3 C 0.12 2.31 0.79 -90.58 -0.07 2.24 16 4 C -0.17 -3.30 7.25 37.15 0.27 -3.03 16 5 C -0.12 -2.59 4.00 -26.59 -0.11 -2.70 16 6 C 0.25 6.19 0.67 -91.59 -0.06 6.13 16 7 O -0.58 -14.37 9.08 -35.23 -0.32 -14.69 16 8 C -0.53 -14.34 8.26 -34.44 -0.28 -14.62 16 9 H 0.06 1.58 7.75 -52.49 -0.41 1.17 16 10 C 0.07 1.82 5.22 -17.82 -0.09 1.73 16 11 N -0.90 -23.73 9.75 55.43 0.54 -23.19 16 12 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 C -0.17 -3.97 4.85 -26.59 -0.13 -4.10 16 17 C 0.06 1.22 6.44 37.21 0.24 1.46 16 18 O -0.39 -7.96 9.56 -35.23 -0.34 -8.30 16 19 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 20 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 21 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.67 6.01 -51.93 -0.31 0.36 16 25 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 26 H 0.09 1.97 3.81 -51.93 -0.20 1.77 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.37 9.58 7.18 45.56 0.33 9.90 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 2.48 6.18 -51.93 -0.32 2.16 16 33 H 0.05 1.00 5.98 -51.93 -0.31 0.69 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 255.64 15.07 3.85 3.85 Total: -1.00 -26.70 255.64 -5.77 -32.47 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.46 Total: 10.64 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.02 Total: -16.55 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.54 Total: -23.19 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.66 Total: -22.99 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -26.70 -5.77 -32.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.906 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds