Wall clock time and date at job start Mon Mar 30 2020 02:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 C 1.52992 * 109.48186 * 60.02536 * 3 2 1 5 5 C 1.53097 * 109.48928 * 180.02562 * 3 2 1 6 6 C 1.53177 * 109.16144 * 177.59834 * 5 3 2 7 7 O 1.42897 * 109.54522 * 62.88857 * 6 5 3 8 8 C 1.50703 * 109.54200 * 183.15201 * 6 5 3 9 9 H 1.07998 * 120.00088 * 359.55812 * 8 6 5 10 10 C 1.37877 * 119.99759 * 179.55525 * 8 6 5 11 11 N 1.31508 * 120.00252 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99662 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47232 * 89.99981 * 12 10 8 14 14 H 1.48503 * 109.47190 * 210.00004 * 12 10 8 15 15 H 1.48498 * 109.47167 * 329.99581 * 12 10 8 16 16 C 1.53181 * 109.03863 * 303.01898 * 6 5 3 17 17 C 1.53093 * 109.16115 * 56.97903 * 16 6 5 18 18 O 1.42900 * 109.41767 * 302.39534 * 17 16 6 19 19 H 1.09000 * 109.47470 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47219 * 300.00564 * 1 2 3 21 21 H 1.09004 * 109.47559 * 59.99777 * 1 2 3 22 22 H 1.09000 * 109.47073 * 240.00186 * 2 1 3 23 23 H 1.09003 * 109.47040 * 120.00292 * 2 1 3 24 24 H 1.09004 * 109.47377 * 308.68027 * 4 3 2 25 25 H 1.09004 * 109.47709 * 68.67866 * 4 3 2 26 26 H 1.09007 * 109.47593 * 188.68244 * 4 3 2 27 27 H 1.08994 * 109.52288 * 297.50093 * 5 3 2 28 28 H 1.09000 * 109.52309 * 57.69756 * 5 3 2 29 29 H 0.96705 * 114.00267 * 180.44268 * 7 6 5 30 30 H 0.97003 * 119.99864 * 180.02562 * 11 10 8 31 31 H 1.09001 * 109.51875 * 297.07556 * 16 6 5 32 32 H 1.08994 * 109.52283 * 176.89098 * 16 6 5 33 33 H 1.08994 * 109.47674 * 62.37960 * 17 16 6 34 34 H 1.09000 * 109.47821 * 182.39565 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5306 2.1637 1.2494 5 6 3.5709 1.4429 -0.0006 6 6 4.0732 2.8887 -0.0613 7 8 3.6507 3.5911 1.1093 8 6 5.5782 2.8966 -0.1404 9 1 6.1238 1.9646 -0.1397 10 6 6.2583 4.0937 -0.2137 11 7 5.5939 5.2286 -0.2141 12 14 8.1237 4.1034 -0.3125 13 1 8.5443 4.0623 -1.7361 14 1 8.6466 5.3397 0.3226 15 1 8.6632 2.9160 0.3976 16 6 3.4912 3.5682 -1.3046 17 6 1.9633 3.4856 -1.2536 18 8 1.5642 2.1162 -1.1670 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.8932 -0.5138 -0.8900 23 1 1.8932 -0.5139 0.8900 24 1 0.4517 2.0315 1.3309 25 1 2.0154 1.7473 2.1325 26 1 1.7618 3.2264 1.1752 27 1 3.9357 0.9685 0.9103 28 1 3.9350 0.8942 -0.8692 29 1 3.9288 4.5169 1.1343 30 1 6.0725 6.0707 -0.2661 31 1 3.8537 3.0623 -2.1995 32 1 3.7990 4.6135 -1.3262 33 1 1.5991 4.0263 -0.3802 34 1 1.5450 3.9300 -2.1567 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879091.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:45 Heat of formation + Delta-G solvation = -127.326483 kcal Electronic energy + Delta-G solvation = -15891.556528 eV Core-core repulsion = 13402.284988 eV Total energy + Delta-G solvation = -2489.271540 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.01266 -37.40252 -35.21549 -34.14565 -32.34598 -30.70957 -29.22512 -27.25325 -24.70576 -24.14046 -21.50194 -19.93271 -18.89414 -17.18284 -16.99386 -16.76343 -16.13247 -15.36309 -15.22196 -14.77575 -14.56727 -14.08319 -13.83438 -13.47529 -13.02402 -12.89374 -12.70344 -12.57545 -12.49548 -12.18190 -12.04688 -11.93192 -11.85526 -11.47169 -11.42336 -10.79483 -10.49365 -10.29175 -9.77116 -8.16202 -6.35772 1.37536 1.40197 1.49112 2.37593 3.00332 3.03588 3.93466 4.01802 4.22544 4.26718 4.39134 4.48050 4.57306 4.64951 4.78676 4.82012 4.88660 4.91225 4.95604 5.12539 5.19659 5.24865 5.30411 5.41111 5.52556 5.56782 5.68997 5.81688 6.00349 6.19294 6.54257 6.68854 7.35091 7.49592 8.82590 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.053081 B = 0.009708 C = 0.009286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.373592 B = 2883.588145 C = 3014.537657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.116 3.884 4 C -0.168 4.168 5 C -0.116 4.116 6 C 0.242 3.758 7 O -0.580 6.580 8 C -0.563 4.563 9 H 0.046 0.954 10 C 0.031 3.969 11 N -0.909 5.909 12 Si 0.955 3.045 13 H -0.277 1.277 14 H -0.279 1.279 15 H -0.276 1.276 16 C -0.162 4.162 17 C 0.066 3.934 18 O -0.388 6.388 19 H 0.069 0.931 20 H 0.058 0.942 21 H 0.050 0.950 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.368 0.632 30 H 0.269 0.731 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 -4.914 0.219 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.145 4.145 3 C 0.077 3.923 4 C -0.225 4.225 5 C -0.154 4.154 6 C 0.203 3.797 7 O -0.388 6.388 8 C -0.601 4.601 9 H 0.064 0.936 10 C -0.169 4.169 11 N -0.550 5.550 12 Si 0.781 3.219 13 H -0.202 1.202 14 H -0.204 1.204 15 H -0.201 1.201 16 C -0.200 4.200 17 C -0.011 4.011 18 O -0.308 6.308 19 H 0.088 0.912 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.100 0.900 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.217 0.783 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.447 -5.408 0.221 9.206 hybrid contribution 1.863 0.966 -0.148 2.104 sum -5.583 -4.442 0.073 7.135 Atomic orbital electron populations 1.21709 0.94179 1.02001 1.02009 1.21537 0.97657 0.92834 1.02487 1.21538 0.91821 0.93328 0.85594 1.22485 1.00055 1.03095 0.96841 1.22091 0.95841 0.96894 1.00600 1.18674 0.90729 0.88039 0.82258 1.86220 1.78930 1.28467 1.45210 1.22039 0.93819 0.92755 1.51528 0.93582 1.25622 1.02608 0.95193 0.93475 1.69671 1.36791 0.97716 1.50804 0.85616 0.80628 0.77523 0.78151 1.20242 1.20384 1.20086 1.22621 0.94977 1.03367 0.99065 1.22567 0.94519 0.82861 1.01129 1.87776 1.74962 1.24237 1.43866 0.91226 0.92277 0.93108 0.91888 0.90035 0.91874 0.92906 0.90737 0.92598 0.92510 0.78334 0.92163 0.94689 0.90253 0.93213 0.88883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.43 71.98 0.68 -2.91 16 2 C -0.11 -3.23 5.20 30.59 0.16 -3.07 16 3 C 0.12 4.34 0.79 -10.76 -0.01 4.33 16 4 C -0.17 -6.09 7.25 71.98 0.52 -5.57 16 5 C -0.12 -5.10 4.00 30.69 0.12 -4.98 16 6 C 0.24 11.98 0.67 -11.42 -0.01 11.97 16 7 O -0.58 -28.84 9.08 -148.98 -1.35 -30.19 16 8 C -0.56 -30.77 8.26 25.60 0.21 -30.56 16 9 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 10 C 0.03 1.64 5.22 84.66 0.44 2.08 16 11 N -0.91 -48.16 9.75 21.45 0.21 -47.95 16 12 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 16 C -0.16 -7.64 4.85 30.69 0.15 -7.49 16 17 C 0.07 2.63 6.44 72.01 0.46 3.09 16 18 O -0.39 -15.36 9.56 -148.98 -1.42 -16.78 16 19 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.06 1.44 6.25 -2.39 -0.01 1.42 16 21 H 0.05 1.38 7.68 -2.38 -0.02 1.37 16 22 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.06 1.97 6.01 -2.39 -0.01 1.96 16 25 H 0.05 1.91 8.13 -2.39 -0.02 1.89 16 26 H 0.07 3.03 3.81 -2.38 -0.01 3.02 16 27 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 29 H 0.37 19.08 7.18 -74.05 -0.53 18.55 16 30 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 4.04 6.18 -2.39 -0.01 4.03 16 33 H 0.05 1.99 5.98 -2.39 -0.01 1.98 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -55.67 255.64 2.75 -52.92 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.55 Total: 30.44 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 2.73 Total: -33.10 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.21 Total: -47.95 kcal Atomic # 8 Polarization: -44.19 SS G_CDS: -2.78 Total: -46.97 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -55.67 2.75 -52.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879091.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.402 kcal (2) G-P(sol) polarization free energy of solvation -55.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds