Wall clock time and date at job start Mon Mar 30 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 110.55625 * 2 1 4 4 C 1.55002 * 110.62069 * 122.88196 * 2 1 3 5 5 C 1.54809 * 102.09130 * 81.47132 * 4 2 1 6 6 O 1.42901 * 110.49160 * 262.20603 * 5 4 2 7 7 C 1.50707 * 110.48739 * 139.55735 * 5 4 2 8 8 H 1.08005 * 119.99354 * 357.66189 * 7 5 4 9 9 C 1.37877 * 120.00268 * 177.65808 * 7 5 4 10 10 N 1.31508 * 119.99946 * 174.69794 * 9 7 5 11 11 Si 1.86807 * 119.99751 * 354.69874 * 9 7 5 12 12 H 1.48505 * 109.46755 * 94.03293 * 11 9 7 13 13 H 1.48497 * 109.46826 * 214.03129 * 11 9 7 14 14 H 1.48492 * 109.47166 * 334.03086 * 11 9 7 15 15 C 1.54102 * 104.19133 * 20.88486 * 5 4 2 16 16 C 1.52997 * 109.87998 * 121.44720 * 15 5 4 17 17 C 1.52995 * 109.88102 * 242.60335 * 15 5 4 18 18 O 1.43748 * 107.28888 * 2.02811 * 15 5 4 19 19 H 1.09005 * 109.46393 * 312.37278 * 1 2 3 20 20 H 1.09001 * 109.47373 * 72.37255 * 1 2 3 21 21 H 1.09000 * 109.47052 * 192.37513 * 1 2 3 22 22 H 1.09002 * 109.47291 * 182.88145 * 3 2 1 23 23 H 1.09004 * 109.47355 * 302.88066 * 3 2 1 24 24 H 1.09004 * 109.47369 * 62.87900 * 3 2 1 25 25 H 1.09001 * 110.90044 * 323.27712 * 4 2 1 26 26 H 1.08995 * 110.90827 * 199.66996 * 4 2 1 27 27 H 0.96700 * 114.00039 * 298.54666 * 6 5 4 28 28 H 0.97002 * 119.99922 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.46925 * 66.55336 * 16 15 5 30 30 H 1.09004 * 109.46995 * 186.54617 * 16 15 5 31 31 H 1.09000 * 109.47538 * 306.55039 * 16 15 5 32 32 H 1.09004 * 109.46853 * 56.72613 * 17 15 5 33 33 H 1.08997 * 109.47519 * 176.72233 * 17 15 5 34 34 H 1.09001 * 109.47247 * 296.72688 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4325 0.0000 4 6 2.0759 -0.7876 1.2183 5 6 1.9799 -2.2525 0.7268 6 8 0.7892 -2.8690 1.2210 7 6 3.1961 -3.0330 1.1545 8 1 3.9931 -2.5397 1.6911 9 6 3.2913 -4.3768 0.8608 10 7 4.3953 -5.0344 1.1406 11 14 1.8521 -5.2632 0.0654 12 1 2.0287 -5.2698 -1.4091 13 1 1.7954 -6.6610 0.5634 14 1 0.5885 -4.5634 0.4095 15 6 1.9282 -2.1332 -0.8087 16 6 3.0941 -2.9049 -1.4300 17 6 0.5994 -2.6847 -1.3289 18 8 2.0384 -0.7370 -1.1327 19 1 -0.3632 0.6927 0.7593 20 1 -0.3634 0.3112 -0.9794 21 1 -0.3633 -1.0038 0.2202 22 1 3.1558 1.4124 -0.0517 23 1 1.6724 1.9687 -0.8631 24 1 1.7561 1.9373 0.9147 25 1 1.4489 -0.6299 2.0959 26 1 3.1102 -0.5141 1.4265 27 1 0.7425 -2.9172 2.1856 28 1 4.4624 -5.9797 0.9336 29 1 2.9627 -3.9713 -1.2465 30 1 3.1197 -2.7216 -2.5042 31 1 4.0303 -2.5717 -0.9821 32 1 -0.2254 -2.1553 -0.8519 33 1 0.5453 -2.5442 -2.4085 34 1 0.5314 -3.7476 -1.0970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086928938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:23 Heat of formation + Delta-G solvation = -67.561786 kcal Electronic energy + Delta-G solvation = -16421.518931 eV Core-core repulsion = 13934.838982 eV Total energy + Delta-G solvation = -2486.679949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.88964 -35.50848 -33.60171 -32.36404 -30.76484 -28.89492 -27.33356 -25.99852 -24.91506 -21.79204 -19.85732 -18.70210 -17.20983 -15.59234 -15.42712 -14.91191 -14.32757 -13.87949 -13.33039 -13.11040 -12.81273 -12.39994 -12.19748 -12.09851 -11.75853 -11.60294 -11.50781 -11.34657 -11.20069 -10.61061 -10.32916 -10.02939 -9.95438 -9.58777 -9.33112 -9.04780 -8.64021 -8.52072 -8.01498 -6.15932 -4.22822 3.31413 3.46865 3.67034 4.42661 4.48953 5.12191 5.27398 5.36693 5.45129 5.52823 5.83013 5.88414 5.96597 6.00126 6.08566 6.16393 6.27021 6.29411 6.38402 6.52873 6.65829 6.68611 6.71649 6.85189 6.96840 7.01037 7.23946 7.43285 7.62679 7.85702 8.24048 8.78016 8.93683 9.46976 10.92435 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040588 B = 0.014756 C = 0.013921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.689518 B = 1897.082078 C = 2010.915548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 C -0.135 4.135 4 C -0.155 4.155 5 C 0.201 3.799 6 O -0.566 6.566 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.085 3.915 10 N -0.888 5.888 11 Si 0.855 3.145 12 H -0.281 1.281 13 H -0.310 1.310 14 H -0.187 1.187 15 C 0.114 3.886 16 C -0.133 4.133 17 C -0.171 4.171 18 O -0.366 6.366 19 H 0.054 0.946 20 H 0.053 0.947 21 H 0.082 0.918 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.360 0.640 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 7.308 -1.467 10.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.054 3.946 3 C -0.192 4.192 4 C -0.193 4.193 5 C 0.162 3.838 6 O -0.373 6.373 7 C -0.584 4.584 8 H 0.094 0.906 9 C -0.119 4.119 10 N -0.524 5.524 11 Si 0.686 3.314 12 H -0.210 1.210 13 H -0.239 1.239 14 H -0.110 1.110 15 C 0.074 3.926 16 C -0.190 4.190 17 C -0.228 4.228 18 O -0.286 6.286 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.100 0.900 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.207 0.793 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.085 7.204 -2.294 10.361 hybrid contribution -0.361 -0.617 0.288 0.771 sum -7.446 6.587 -2.006 10.141 Atomic orbital electron populations 1.22469 0.95737 1.03435 1.01168 1.22351 0.92881 0.92257 0.87103 1.21719 1.01697 0.94467 1.01315 1.23688 1.01226 0.97659 0.96713 1.20323 0.84756 0.88944 0.89811 1.86718 1.43732 1.81909 1.24979 1.21173 1.03411 0.94524 1.39270 0.90619 1.25059 0.95625 0.97461 0.93724 1.69946 1.26339 1.09662 1.46485 0.88155 0.87686 0.77343 0.78230 1.20973 1.23932 1.10979 1.22123 0.94500 0.80974 0.94960 1.22211 0.99065 1.00467 0.97219 1.22646 0.98457 1.02287 0.99410 1.88839 1.83806 1.17238 1.38740 0.92734 0.92799 0.89983 0.91975 0.92691 0.91885 0.91632 0.90566 0.79265 0.92552 0.90872 0.95126 0.90274 0.91392 0.94057 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 7.95 37.16 0.30 -2.48 16 2 C 0.09 1.71 1.25 -89.57 -0.11 1.59 16 3 C -0.13 -2.04 8.99 37.15 0.33 -1.71 16 4 C -0.15 -3.06 5.35 -24.72 -0.13 -3.19 16 5 C 0.20 4.54 0.58 -90.24 -0.05 4.49 16 6 O -0.57 -11.90 6.63 -35.23 -0.23 -12.13 16 7 C -0.55 -14.61 7.22 -34.44 -0.25 -14.85 16 8 H 0.08 2.22 7.78 -52.48 -0.41 1.81 16 9 C 0.09 2.37 4.28 -17.82 -0.08 2.29 16 10 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 11 Si 0.86 20.98 21.20 -169.99 -3.60 17.37 16 12 H -0.28 -6.87 6.20 56.52 0.35 -6.52 16 13 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 14 H -0.19 -4.28 4.01 56.52 0.23 -4.05 16 15 C 0.11 2.57 0.85 -90.05 -0.08 2.49 16 16 C -0.13 -3.19 7.37 37.16 0.27 -2.92 16 17 C -0.17 -3.59 7.45 37.16 0.28 -3.31 16 18 O -0.37 -7.92 10.36 -35.23 -0.36 -8.28 16 19 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 21 H 0.08 1.44 4.30 -51.93 -0.22 1.21 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16 26 H 0.08 1.58 7.60 -51.93 -0.39 1.18 16 27 H 0.36 6.59 9.09 45.56 0.41 7.01 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.07 1.85 2.28 -51.93 -0.12 1.73 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 2.02 7.05 -51.93 -0.37 1.65 16 32 H 0.07 1.33 4.61 -51.93 -0.24 1.09 16 33 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.43 3.45 -51.93 -0.18 1.25 16 LS Contribution 240.16 15.07 3.62 3.62 Total: -1.00 -29.59 240.16 -3.58 -33.16 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.25 Total: 9.41 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 0.48 Total: -17.60 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.77 Total: -25.55 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.60 Total: -20.42 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -3.60 Total: 17.37 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.59 -3.58 -33.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086928938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.398 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds