Wall clock time and date at job start Mon Mar 30 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 110.55625 * 2 1 4 4 C 1.55002 * 110.62069 * 122.88196 * 2 1 3 5 5 C 1.54809 * 102.09130 * 81.47132 * 4 2 1 6 6 O 1.42901 * 110.49160 * 262.20603 * 5 4 2 7 7 C 1.50707 * 110.48739 * 139.55735 * 5 4 2 8 8 H 1.08005 * 119.99354 * 357.66189 * 7 5 4 9 9 C 1.37877 * 120.00268 * 177.65808 * 7 5 4 10 10 N 1.31508 * 119.99946 * 174.69794 * 9 7 5 11 11 Si 1.86807 * 119.99751 * 354.69874 * 9 7 5 12 12 H 1.48505 * 109.46755 * 94.03293 * 11 9 7 13 13 H 1.48497 * 109.46826 * 214.03129 * 11 9 7 14 14 H 1.48492 * 109.47166 * 334.03086 * 11 9 7 15 15 C 1.54102 * 104.19133 * 20.88486 * 5 4 2 16 16 C 1.52997 * 109.87998 * 121.44720 * 15 5 4 17 17 C 1.52995 * 109.88102 * 242.60335 * 15 5 4 18 18 O 1.43748 * 107.28888 * 2.02811 * 15 5 4 19 19 H 1.09005 * 109.46393 * 312.37278 * 1 2 3 20 20 H 1.09001 * 109.47373 * 72.37255 * 1 2 3 21 21 H 1.09000 * 109.47052 * 192.37513 * 1 2 3 22 22 H 1.09002 * 109.47291 * 182.88145 * 3 2 1 23 23 H 1.09004 * 109.47355 * 302.88066 * 3 2 1 24 24 H 1.09004 * 109.47369 * 62.87900 * 3 2 1 25 25 H 1.09001 * 110.90044 * 323.27712 * 4 2 1 26 26 H 1.08995 * 110.90827 * 199.66996 * 4 2 1 27 27 H 0.96700 * 114.00039 * 298.54666 * 6 5 4 28 28 H 0.97002 * 119.99922 * 180.02562 * 10 9 7 29 29 H 1.09000 * 109.46925 * 66.55336 * 16 15 5 30 30 H 1.09004 * 109.46995 * 186.54617 * 16 15 5 31 31 H 1.09000 * 109.47538 * 306.55039 * 16 15 5 32 32 H 1.09004 * 109.46853 * 56.72613 * 17 15 5 33 33 H 1.08997 * 109.47519 * 176.72233 * 17 15 5 34 34 H 1.09001 * 109.47247 * 296.72688 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4325 0.0000 4 6 2.0759 -0.7876 1.2183 5 6 1.9799 -2.2525 0.7268 6 8 0.7892 -2.8690 1.2210 7 6 3.1961 -3.0330 1.1545 8 1 3.9931 -2.5397 1.6911 9 6 3.2913 -4.3768 0.8608 10 7 4.3953 -5.0344 1.1406 11 14 1.8521 -5.2632 0.0654 12 1 2.0287 -5.2698 -1.4091 13 1 1.7954 -6.6610 0.5634 14 1 0.5885 -4.5634 0.4095 15 6 1.9282 -2.1332 -0.8087 16 6 3.0941 -2.9049 -1.4300 17 6 0.5994 -2.6847 -1.3289 18 8 2.0384 -0.7370 -1.1327 19 1 -0.3632 0.6927 0.7593 20 1 -0.3634 0.3112 -0.9794 21 1 -0.3633 -1.0038 0.2202 22 1 3.1558 1.4124 -0.0517 23 1 1.6724 1.9687 -0.8631 24 1 1.7561 1.9373 0.9147 25 1 1.4489 -0.6299 2.0959 26 1 3.1102 -0.5141 1.4265 27 1 0.7425 -2.9172 2.1856 28 1 4.4624 -5.9797 0.9336 29 1 2.9627 -3.9713 -1.2465 30 1 3.1197 -2.7216 -2.5042 31 1 4.0303 -2.5717 -0.9821 32 1 -0.2254 -2.1553 -0.8519 33 1 0.5453 -2.5442 -2.4085 34 1 0.5314 -3.7476 -1.0970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086928938.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:22 Heat of formation + Delta-G solvation = -90.534858 kcal Electronic energy + Delta-G solvation = -16422.515118 eV Core-core repulsion = 13934.838982 eV Total energy + Delta-G solvation = -2487.676136 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.53472 -37.20261 -35.29238 -34.28512 -32.47358 -30.55138 -28.79017 -27.53696 -26.85709 -23.51955 -21.40223 -20.50132 -19.11938 -17.36425 -17.07501 -16.62214 -16.02119 -15.59478 -15.10280 -14.77942 -14.50477 -14.07238 -13.84721 -13.67410 -13.29356 -13.14118 -13.03233 -12.89090 -12.70801 -12.36166 -12.10983 -11.77034 -11.53166 -11.38923 -11.12122 -10.82941 -10.64980 -10.34696 -9.77910 -8.32057 -6.41675 1.35298 1.46895 1.71487 2.38898 2.93423 3.03427 3.58993 3.91834 4.02961 4.14914 4.21465 4.29335 4.50363 4.58273 4.66936 4.75781 4.80840 4.90683 4.92107 4.95675 5.01516 5.04761 5.25624 5.32517 5.37764 5.45497 5.49017 5.56996 5.72282 6.11229 6.24470 6.63988 7.18170 7.36943 8.79820 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.040588 B = 0.014756 C = 0.013921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.689518 B = 1897.082078 C = 2010.915548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 C -0.132 4.132 4 C -0.153 4.153 5 C 0.202 3.798 6 O -0.562 6.562 7 C -0.542 4.542 8 H 0.033 0.967 9 C 0.040 3.960 10 N -0.938 5.938 11 Si 0.904 3.096 12 H -0.280 1.280 13 H -0.324 1.324 14 H -0.152 1.152 15 C 0.112 3.888 16 C -0.133 4.133 17 C -0.169 4.169 18 O -0.382 6.382 19 H 0.083 0.917 20 H 0.062 0.938 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.375 0.625 28 H 0.264 0.736 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 8.825 -1.889 13.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.048 3.952 3 C -0.189 4.189 4 C -0.191 4.191 5 C 0.162 3.838 6 O -0.371 6.371 7 C -0.580 4.580 8 H 0.051 0.949 9 C -0.159 4.159 10 N -0.577 5.577 11 Si 0.733 3.267 12 H -0.208 1.208 13 H -0.254 1.254 14 H -0.074 1.074 15 C 0.072 3.928 16 C -0.190 4.190 17 C -0.225 4.225 18 O -0.302 6.302 19 H 0.101 0.899 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.224 0.776 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.886 8.753 -2.704 13.478 hybrid contribution 0.607 -1.006 0.472 1.266 sum -9.278 7.747 -2.231 12.292 Atomic orbital electron populations 1.22407 0.93465 1.03611 1.02746 1.22686 0.94626 0.93049 0.84819 1.21747 1.00921 0.92810 1.03457 1.23638 1.00838 0.95966 0.98692 1.20133 0.83298 0.89955 0.90412 1.86621 1.42164 1.81824 1.26444 1.21391 1.04045 0.94647 1.37890 0.94889 1.25778 0.97641 0.98285 0.94228 1.70081 1.28695 1.09924 1.48977 0.87444 0.86349 0.75570 0.77337 1.20816 1.25388 1.07442 1.21992 0.94645 0.81734 0.94412 1.22151 0.98652 0.99851 0.98358 1.22611 0.97717 1.01688 1.00516 1.88817 1.84521 1.16701 1.40203 0.89850 0.91916 0.91106 0.93258 0.91219 0.89142 0.89084 0.92630 0.77620 0.92746 0.92226 0.93395 0.93338 0.89602 0.92698 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 7.95 71.98 0.57 -3.99 16 2 C 0.09 2.89 1.25 -10.11 -0.01 2.88 16 3 C -0.13 -3.57 8.99 71.98 0.65 -2.92 16 4 C -0.15 -5.76 5.35 31.90 0.17 -5.59 16 5 C 0.20 8.83 0.58 -10.55 -0.01 8.83 16 6 O -0.56 -21.86 6.63 -148.98 -0.99 -22.85 16 7 C -0.54 -29.56 7.22 25.60 0.18 -29.37 16 8 H 0.03 2.03 7.78 -2.91 -0.02 2.01 16 9 C 0.04 2.25 4.28 84.66 0.36 2.62 16 10 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 11 Si 0.90 43.07 21.20 68.60 1.45 44.52 16 12 H -0.28 -13.20 6.20 99.48 0.62 -12.58 16 13 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 14 H -0.15 -6.43 4.01 99.48 0.40 -6.03 16 15 C 0.11 4.83 0.85 -10.42 -0.01 4.82 16 16 C -0.13 -6.38 7.37 71.98 0.53 -5.85 16 17 C -0.17 -6.49 7.45 71.98 0.54 -5.95 16 18 O -0.38 -15.67 10.36 -148.98 -1.54 -17.21 16 19 H 0.08 1.83 8.11 -2.38 -0.02 1.81 16 20 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.07 2.13 4.30 -2.39 -0.01 2.12 16 22 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.09 2.91 7.99 -2.39 -0.02 2.89 16 26 H 0.05 2.29 7.60 -2.39 -0.02 2.27 16 27 H 0.37 12.50 9.09 -74.06 -0.67 11.82 16 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.06 3.00 2.28 -2.39 -0.01 2.99 16 30 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.05 2.54 7.05 -2.39 -0.02 2.53 16 32 H 0.09 2.99 4.61 -2.38 -0.01 2.98 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 2.29 3.45 -2.39 -0.01 2.28 16 Total: -1.00 -64.70 240.16 2.23 -62.47 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 0.03 Total: 25.00 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 2.98 Total: -34.52 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.30 Total: -57.41 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.53 Total: -40.06 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.45 Total: 44.52 kcal Total: -64.70 2.23 -62.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086928938.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.063 kcal (2) G-P(sol) polarization free energy of solvation -64.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds