Wall clock time and date at job start Mon Mar 30 2020 02:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 110.67125 * 2 1 4 4 C 1.54993 * 110.62076 * 237.03496 * 2 1 3 5 5 C 1.54804 * 102.09267 * 278.52029 * 4 2 1 6 6 O 1.42907 * 110.60255 * 97.85074 * 5 4 2 7 7 C 1.50703 * 110.48857 * 220.44173 * 5 4 2 8 8 H 1.08006 * 119.99885 * 114.76763 * 7 5 4 9 9 C 1.37873 * 120.00422 * 294.76528 * 7 5 4 10 10 N 1.31522 * 119.99582 * 0.02562 * 9 7 5 11 11 Si 1.86794 * 120.00381 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47557 * 270.00126 * 11 9 7 13 13 H 1.48498 * 109.47012 * 30.00631 * 11 9 7 14 14 H 1.48505 * 109.47113 * 150.00413 * 11 9 7 15 15 C 1.54100 * 104.18758 * 339.11930 * 5 4 2 16 16 C 1.53001 * 109.87752 * 117.39722 * 15 5 4 17 17 C 1.53002 * 109.87642 * 238.54439 * 15 5 4 18 18 O 1.43736 * 107.29333 * 357.97055 * 15 5 4 19 19 H 1.08990 * 109.47042 * 287.11477 * 1 2 3 20 20 H 1.09000 * 109.47359 * 47.12023 * 1 2 3 21 21 H 1.09000 * 109.46679 * 167.11534 * 1 2 3 22 22 H 1.09005 * 109.46917 * 181.51214 * 3 2 1 23 23 H 1.08997 * 109.46605 * 301.50447 * 3 2 1 24 24 H 1.08991 * 109.47290 * 61.51113 * 3 2 1 25 25 H 1.09007 * 110.91013 * 160.32149 * 4 2 1 26 26 H 1.09001 * 110.90697 * 36.72063 * 4 2 1 27 27 H 0.96705 * 113.99769 * 63.32443 * 6 5 4 28 28 H 0.96999 * 119.99773 * 179.97438 * 10 9 7 29 29 H 1.08993 * 109.47275 * 53.70700 * 16 15 5 30 30 H 1.09003 * 109.47021 * 173.70947 * 16 15 5 31 31 H 1.08999 * 109.47105 * 293.70497 * 16 15 5 32 32 H 1.09004 * 109.47270 * 60.00254 * 17 15 5 33 33 H 1.09004 * 109.46784 * 180.02562 * 17 15 5 34 34 H 1.08994 * 109.47476 * 299.99779 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4316 0.0000 4 6 2.0759 -0.7893 -1.2171 5 6 1.9802 -2.2534 -0.7235 6 8 0.7908 -2.8736 -1.2164 7 6 3.1964 -3.0345 -1.1500 8 1 3.8807 -3.4166 -0.4070 9 6 3.4355 -3.2612 -2.4888 10 7 2.6023 -2.7955 -3.3937 11 14 4.9433 -4.2287 -3.0176 12 1 6.0808 -3.2973 -3.2272 13 1 5.2962 -5.2115 -1.9617 14 1 4.6516 -4.9466 -4.2844 15 6 1.9285 -2.1318 0.8119 16 6 0.5996 -2.6828 1.3329 17 6 3.0944 -2.9026 1.4343 18 8 2.0384 -0.7352 1.1338 19 1 -0.3633 0.3024 0.9821 20 1 -0.3634 0.6993 -0.7530 21 1 -0.3633 -1.0018 -0.2292 22 1 3.1596 1.4088 -0.0271 23 1 1.6959 1.9610 -0.8762 24 1 1.7398 1.9445 0.9031 25 1 3.1103 -0.5160 -1.4259 26 1 1.4490 -0.6330 -2.0950 27 1 0.7574 -2.9500 -2.1798 28 1 2.7707 -2.9547 -4.3356 29 1 0.4544 -3.6959 0.9582 30 1 0.6146 -2.6971 2.4227 31 1 -0.2168 -2.0477 0.9891 32 1 4.0366 -2.4909 1.0725 33 1 3.0511 -2.8125 2.5198 34 1 3.0257 -3.9537 1.1544 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086928940.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:24 Heat of formation + Delta-G solvation = -116.595716 kcal Electronic energy + Delta-G solvation = -16154.785967 eV Core-core repulsion = 13665.979747 eV Total energy + Delta-G solvation = -2488.806219 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27376 -36.90559 -34.87384 -34.12213 -32.40655 -30.14938 -28.75862 -27.55230 -26.68470 -23.54779 -21.34534 -20.25783 -18.63283 -17.13666 -16.88000 -16.35158 -15.95543 -15.58228 -14.64187 -14.42153 -14.32007 -13.67783 -13.47822 -13.31531 -13.18433 -13.06681 -12.90370 -12.78539 -12.65862 -12.61830 -12.26235 -12.03120 -11.78713 -11.49063 -11.21479 -10.86200 -10.65441 -10.22280 -9.93055 -8.18606 -6.29920 1.39817 1.42819 1.51221 2.40246 3.03320 3.07128 3.92966 4.07235 4.11520 4.20248 4.31605 4.41983 4.60748 4.74897 4.76550 4.83083 4.90796 4.92294 5.03480 5.06737 5.12577 5.15601 5.31487 5.44843 5.51984 5.56708 5.58290 5.63483 5.84019 6.17442 6.35601 6.73882 7.39973 7.51230 8.87679 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034454 B = 0.012823 C = 0.011860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.479634 B = 2182.992841 C = 2360.381354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 C -0.129 4.129 4 C -0.130 4.130 5 C 0.226 3.774 6 O -0.584 6.584 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.027 3.973 10 N -0.916 5.916 11 Si 0.953 3.047 12 H -0.279 1.279 13 H -0.270 1.270 14 H -0.284 1.284 15 C 0.103 3.897 16 C -0.144 4.144 17 C -0.117 4.117 18 O -0.381 6.381 19 H 0.066 0.934 20 H 0.071 0.929 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.053 0.947 27 H 0.374 0.626 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 3.989 4.857 6.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.186 4.186 4 C -0.169 4.169 5 C 0.186 3.814 6 O -0.393 6.393 7 C -0.598 4.598 8 H 0.094 0.906 9 C -0.172 4.172 10 N -0.556 5.556 11 Si 0.779 3.221 12 H -0.205 1.205 13 H -0.195 1.195 14 H -0.209 1.209 15 C 0.064 3.936 16 C -0.201 4.201 17 C -0.174 4.174 18 O -0.301 6.301 19 H 0.085 0.915 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.224 0.776 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.073 4.048 5.507 7.143 hybrid contribution 0.903 -0.633 -1.541 1.895 sum -1.170 3.415 3.967 5.363 Atomic orbital electron populations 1.22342 0.94353 1.02937 1.02269 1.22690 0.94075 0.93195 0.85569 1.21702 1.00982 0.92958 1.02955 1.23394 0.98960 0.97946 0.96566 1.19883 0.83520 0.88915 0.89082 1.86103 1.42477 1.83309 1.27387 1.22376 1.09321 1.35197 0.92867 0.90560 1.25681 0.98955 0.95863 0.96723 1.69713 1.38044 1.46446 1.01417 0.85631 0.79913 0.78886 0.77630 1.20492 1.19481 1.20946 1.22044 0.95824 0.81534 0.94161 1.22099 0.96954 1.01449 0.99625 1.21763 0.97223 0.99497 0.98939 1.88760 1.84437 1.17166 1.39785 0.91502 0.90991 0.91869 0.92967 0.90196 0.90978 0.93900 0.92795 0.77625 0.92439 0.92646 0.92491 0.91663 0.92919 0.92307 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 7.75 71.98 0.56 -5.05 16 2 C 0.08 3.26 1.25 -10.11 -0.01 3.25 16 3 C -0.13 -4.12 8.99 71.98 0.65 -3.47 16 4 C -0.13 -6.06 4.58 31.89 0.15 -5.91 16 5 C 0.23 11.03 0.73 -10.55 -0.01 11.03 16 6 O -0.58 -29.32 10.10 -148.98 -1.50 -30.82 16 7 C -0.56 -29.50 7.25 25.60 0.19 -29.32 16 8 H 0.08 3.95 4.73 -2.91 -0.01 3.93 16 9 C 0.03 1.44 5.28 84.65 0.45 1.88 16 10 N -0.92 -48.76 10.95 21.45 0.23 -48.53 16 11 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.10 4.52 1.14 -10.42 -0.01 4.51 16 16 C -0.14 -5.69 7.75 71.98 0.56 -5.13 16 17 C -0.12 -4.80 7.37 71.98 0.53 -4.26 16 18 O -0.38 -16.23 10.35 -148.98 -1.54 -17.77 16 19 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 20 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 21 H 0.06 2.44 4.48 -2.39 -0.01 2.43 16 22 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 2.15 7.77 -2.38 -0.02 2.13 16 26 H 0.05 2.60 7.99 -2.39 -0.02 2.59 16 27 H 0.37 19.64 7.06 -74.05 -0.52 19.12 16 28 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 29 H 0.05 2.28 7.56 -2.39 -0.02 2.26 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.52 4.76 -2.39 -0.01 2.51 16 32 H 0.05 2.25 6.96 -2.39 -0.02 2.23 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.06 2.67 7.29 -2.39 -0.02 2.65 16 Total: -1.00 -55.59 258.21 2.82 -52.77 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.57 Total: 32.58 kcal Atomic # 6 Polarization: -35.51 SS G_CDS: 3.04 Total: -32.47 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.23 Total: -48.53 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -3.05 Total: -48.59 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -55.59 2.82 -52.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086928940.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.824 kcal (2) G-P(sol) polarization free energy of solvation -55.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds