Wall clock time and date at job start Mon Mar 30 2020 02:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37196 * 120.00339 * 2 1 4 4 H 1.07998 * 120.00348 * 205.16431 * 3 2 1 5 5 C 1.38877 * 119.99837 * 25.15867 * 3 2 1 6 6 N 1.31474 * 119.99904 * 11.72811 * 5 3 2 7 7 Si 1.86800 * 120.00162 * 191.73066 * 5 3 2 8 8 H 1.48495 * 109.46971 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47047 * 120.00037 * 7 5 3 10 10 H 1.48499 * 109.46863 * 239.99992 * 7 5 3 11 11 C 1.34781 * 120.00057 * 180.02562 * 2 1 3 12 12 O 1.21577 * 120.00074 * 180.02562 * 11 2 1 13 13 N 1.34771 * 119.99664 * 359.72080 * 11 2 1 14 14 C 1.46503 * 119.99895 * 180.02562 * 13 11 2 15 15 H 1.09000 * 110.45826 * 327.60743 * 14 13 11 16 16 C 1.54513 * 110.51369 * 204.99848 * 14 13 11 17 17 C 1.54483 * 104.06472 * 241.35713 * 16 14 13 18 18 O 1.44423 * 104.80257 * 23.97629 * 17 16 14 19 19 C 1.44425 * 105.27732 * 319.48912 * 18 17 16 20 20 H 1.09001 * 109.46839 * 265.04542 * 1 2 3 21 21 H 1.08997 * 109.47445 * 25.04407 * 1 2 3 22 22 H 1.09001 * 109.47574 * 145.04512 * 1 2 3 23 23 H 0.96999 * 119.99924 * 179.97438 * 6 5 3 24 24 H 0.97001 * 120.00275 * 0.02562 * 13 11 2 25 25 H 1.08999 * 110.50645 * 0.02562 * 16 14 13 26 26 H 1.08999 * 110.50961 * 122.57272 * 16 14 13 27 27 H 1.09000 * 110.37090 * 142.80719 * 17 16 14 28 28 H 1.09001 * 110.36889 * 265.14783 * 17 16 14 29 29 H 1.08994 * 110.37327 * 281.68080 * 19 18 17 30 30 H 1.09004 * 110.37276 * 159.34315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1510 1.1881 0.0000 4 1 3.1541 1.2325 -0.3977 5 6 1.5554 2.3338 0.5113 6 7 0.4391 2.2430 1.1998 7 14 2.3405 4.0037 0.2208 8 1 3.5818 3.8351 -0.5765 9 1 1.3916 4.8750 -0.5178 10 1 2.6724 4.6284 1.5265 11 6 2.1388 -1.1672 -0.0005 12 8 3.3546 -1.1672 -0.0001 13 7 1.4649 -2.3344 0.0046 14 6 2.1974 -3.6031 0.0046 15 1 3.1326 -3.5031 -0.5463 16 6 1.3299 -4.7292 -0.6011 17 6 1.1767 -5.7463 0.5515 18 8 1.3779 -4.9735 1.7548 19 6 2.4658 -4.0733 1.4515 20 1 -0.3633 -0.0888 1.0239 21 1 -0.3634 0.9310 -0.4350 22 1 -0.3634 -0.8423 -0.5888 23 1 0.0233 3.0432 1.5572 24 1 0.4949 -2.3343 0.0084 25 1 0.3563 -4.3417 -0.9010 26 1 1.8362 -5.1858 -1.4515 27 1 0.1776 -6.1819 0.5428 28 1 1.9329 -6.5273 0.4713 29 1 3.4195 -4.5976 1.5094 30 1 2.4568 -3.2237 2.1344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087312181.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:37 Heat of formation + Delta-G solvation = -58.690630 kcal Electronic energy + Delta-G solvation = -14735.565239 eV Core-core repulsion = 12145.729629 eV Total energy + Delta-G solvation = -2589.835610 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.64102 -38.24409 -34.80006 -33.66737 -31.56645 -30.33965 -28.15986 -26.15776 -24.31429 -22.71741 -20.99355 -19.48209 -17.45989 -16.64469 -16.27498 -15.82099 -15.21646 -14.74551 -14.31431 -14.04856 -13.41834 -12.81139 -12.60136 -11.97946 -11.76626 -11.46942 -11.37147 -11.27525 -11.14886 -10.91653 -10.77269 -10.24973 -10.20576 -9.77138 -8.92843 -8.79290 -8.23270 -7.54808 -6.19413 -3.76509 3.23410 3.31413 3.37776 3.82984 4.10865 4.35897 4.37270 4.74093 5.00308 5.09962 5.25428 5.35080 5.46850 5.55489 5.69510 5.74226 5.92438 6.09095 6.21391 6.30656 6.86543 6.91421 7.22432 7.36973 7.66080 7.73090 8.46383 8.82017 9.31891 9.61194 10.18633 10.87971 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.064097 B = 0.007337 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.731476 B = 3815.400337 C = 3945.685876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.474 5.474 3 C -0.289 4.289 4 H 0.096 0.904 5 C 0.024 3.976 6 N -0.892 5.892 7 Si 0.926 3.074 8 H -0.270 1.270 9 H -0.283 1.283 10 H -0.283 1.283 11 C 0.661 3.339 12 O -0.623 6.623 13 N -0.751 5.751 14 C 0.138 3.862 15 H 0.099 0.901 16 C -0.163 4.163 17 C 0.045 3.955 18 O -0.377 6.377 19 C 0.033 3.967 20 H 0.047 0.953 21 H 0.077 0.923 22 H 0.016 0.984 23 H 0.264 0.736 24 H 0.390 0.610 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 -11.232 -2.899 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.197 5.197 3 C -0.417 4.417 4 H 0.113 0.887 5 C -0.178 4.178 6 N -0.533 5.533 7 Si 0.754 3.246 8 H -0.194 1.194 9 H -0.209 1.209 10 H -0.209 1.209 11 C 0.364 3.636 12 O -0.506 6.506 13 N -0.410 5.410 14 C 0.031 3.969 15 H 0.117 0.883 16 C -0.202 4.202 17 C -0.033 4.033 18 O -0.296 6.296 19 C -0.046 4.046 20 H 0.066 0.934 21 H 0.095 0.905 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.225 0.775 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.539 -11.042 -2.617 11.452 hybrid contribution -0.203 0.898 -0.197 0.941 sum -1.741 -10.145 -2.814 10.671 Atomic orbital electron populations 1.21340 0.81539 0.99634 1.00003 1.42745 1.04870 1.03237 1.68873 1.19540 1.00844 0.83502 1.37846 0.88665 1.25302 0.96971 0.99937 0.95568 1.70023 1.19542 1.29203 1.34524 0.85854 0.79038 0.81712 0.78016 1.19391 1.20881 1.20925 1.16096 0.85496 0.80356 0.81686 1.90718 1.12027 1.86296 1.61544 1.45251 1.08892 1.03936 1.82873 1.21879 0.96324 0.83330 0.95385 0.88334 1.23272 1.01434 0.96495 0.98974 1.23378 1.01590 0.93934 0.84354 1.89136 1.53771 1.52455 1.34235 1.24010 0.89570 0.93378 0.97593 0.93406 0.90474 0.96540 0.92634 0.77491 0.90107 0.89814 0.89303 0.92405 0.91929 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.72 8.34 59.84 0.50 3.22 16 2 N -0.47 -12.53 3.01 -127.62 -0.38 -12.92 16 3 C -0.29 -8.30 9.23 -14.91 -0.14 -8.43 16 4 H 0.10 2.85 7.46 -52.49 -0.39 2.46 16 5 C 0.02 0.65 5.06 -17.47 -0.09 0.56 16 6 N -0.89 -24.61 10.84 55.49 0.60 -24.01 16 7 Si 0.93 21.37 29.57 -169.99 -5.03 16.34 16 8 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 C 0.66 16.66 8.23 -86.92 -0.72 15.94 16 12 O -0.62 -17.71 15.71 5.30 0.08 -17.63 16 13 N -0.75 -14.65 4.95 -57.14 -0.28 -14.94 16 14 C 0.14 2.25 3.48 -66.35 -0.23 2.02 16 15 H 0.10 1.72 7.56 -51.93 -0.39 1.32 16 16 C -0.16 -1.94 6.85 -25.16 -0.17 -2.11 16 17 C 0.04 0.51 7.63 37.94 0.29 0.80 16 18 O -0.38 -5.84 11.65 -35.23 -0.41 -6.25 16 19 C 0.03 0.52 7.35 37.94 0.28 0.80 16 20 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 21 H 0.08 1.87 6.78 -51.93 -0.35 1.52 16 22 H 0.02 0.31 6.64 -51.93 -0.35 -0.04 16 23 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 24 H 0.39 6.89 6.23 -40.82 -0.25 6.63 16 25 H 0.08 0.92 7.70 -51.93 -0.40 0.52 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.83 8.06 -51.93 -0.42 1.41 16 LS Contribution 252.37 15.07 3.80 3.80 Total: -1.00 -32.45 252.37 -5.68 -38.13 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.79 Total: 4.67 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -0.28 Total: 12.80 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -0.07 Total: -51.86 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.33 Total: -23.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.45 -5.68 -38.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312181.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.560 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds