Wall clock time and date at job start Mon Mar 30 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37196 * 120.00339 * 2 1 4 4 H 1.07998 * 120.00348 * 205.16431 * 3 2 1 5 5 C 1.38877 * 119.99837 * 25.15867 * 3 2 1 6 6 N 1.31474 * 119.99904 * 11.72811 * 5 3 2 7 7 Si 1.86800 * 120.00162 * 191.73066 * 5 3 2 8 8 H 1.48495 * 109.46971 * 359.97438 * 7 5 3 9 9 H 1.48492 * 109.47047 * 120.00037 * 7 5 3 10 10 H 1.48499 * 109.46863 * 239.99992 * 7 5 3 11 11 C 1.34781 * 120.00057 * 180.02562 * 2 1 3 12 12 O 1.21577 * 120.00074 * 180.02562 * 11 2 1 13 13 N 1.34771 * 119.99664 * 359.72080 * 11 2 1 14 14 C 1.46503 * 119.99895 * 180.02562 * 13 11 2 15 15 H 1.09000 * 110.45826 * 327.60743 * 14 13 11 16 16 C 1.54513 * 110.51369 * 204.99848 * 14 13 11 17 17 C 1.54483 * 104.06472 * 241.35713 * 16 14 13 18 18 O 1.44423 * 104.80257 * 23.97629 * 17 16 14 19 19 C 1.44425 * 105.27732 * 319.48912 * 18 17 16 20 20 H 1.09001 * 109.46839 * 265.04542 * 1 2 3 21 21 H 1.08997 * 109.47445 * 25.04407 * 1 2 3 22 22 H 1.09001 * 109.47574 * 145.04512 * 1 2 3 23 23 H 0.96999 * 119.99924 * 179.97438 * 6 5 3 24 24 H 0.97001 * 120.00275 * 0.02562 * 13 11 2 25 25 H 1.08999 * 110.50645 * 0.02562 * 16 14 13 26 26 H 1.08999 * 110.50961 * 122.57272 * 16 14 13 27 27 H 1.09000 * 110.37090 * 142.80719 * 17 16 14 28 28 H 1.09001 * 110.36889 * 265.14783 * 17 16 14 29 29 H 1.08994 * 110.37327 * 281.68080 * 19 18 17 30 30 H 1.09004 * 110.37276 * 159.34315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1510 1.1881 0.0000 4 1 3.1541 1.2325 -0.3977 5 6 1.5554 2.3338 0.5113 6 7 0.4391 2.2430 1.1998 7 14 2.3405 4.0037 0.2208 8 1 3.5818 3.8351 -0.5765 9 1 1.3916 4.8750 -0.5178 10 1 2.6724 4.6284 1.5265 11 6 2.1388 -1.1672 -0.0005 12 8 3.3546 -1.1672 -0.0001 13 7 1.4649 -2.3344 0.0046 14 6 2.1974 -3.6031 0.0046 15 1 3.1326 -3.5031 -0.5463 16 6 1.3299 -4.7292 -0.6011 17 6 1.1767 -5.7463 0.5515 18 8 1.3779 -4.9735 1.7548 19 6 2.4658 -4.0733 1.4515 20 1 -0.3633 -0.0888 1.0239 21 1 -0.3634 0.9310 -0.4350 22 1 -0.3634 -0.8423 -0.5888 23 1 0.0233 3.0432 1.5572 24 1 0.4949 -2.3343 0.0084 25 1 0.3563 -4.3417 -0.9010 26 1 1.8362 -5.1858 -1.4515 27 1 0.1776 -6.1819 0.5428 28 1 1.9329 -6.5273 0.4713 29 1 3.4195 -4.5976 1.5094 30 1 2.4568 -3.2237 2.1344 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087312181.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:36 Heat of formation + Delta-G solvation = -82.817876 kcal Electronic energy + Delta-G solvation = -14736.611475 eV Core-core repulsion = 12145.729629 eV Total energy + Delta-G solvation = -2590.881846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16637 -39.81315 -36.75825 -35.33648 -33.54903 -31.60873 -29.46918 -28.11088 -26.27450 -23.87375 -22.30258 -21.24651 -19.27527 -18.65837 -17.60727 -17.08734 -16.70460 -16.45522 -16.00966 -15.75352 -15.03127 -14.50816 -14.11920 -13.64145 -13.36898 -13.17251 -12.83747 -12.69013 -12.63754 -12.49152 -12.30590 -12.08436 -11.88001 -10.98828 -10.89456 -10.84544 -9.93550 -9.53471 -8.27621 -5.92320 1.40865 1.42678 1.56928 2.11797 2.39379 2.52070 3.04689 3.18137 3.57714 3.67104 3.92395 4.17541 4.22830 4.36965 4.53514 4.66911 4.76322 4.87176 4.97341 5.01054 5.06190 5.31919 5.48436 5.72874 5.83666 5.95029 6.38189 6.87826 7.25646 7.64689 8.18775 8.78326 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.064097 B = 0.007337 C = 0.007095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.731476 B = 3815.400337 C = 3945.685876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.492 5.492 3 C -0.325 4.325 4 H 0.070 0.930 5 C -0.011 4.011 6 N -0.908 5.908 7 Si 0.993 3.007 8 H -0.273 1.273 9 H -0.266 1.266 10 H -0.278 1.278 11 C 0.655 3.345 12 O -0.664 6.664 13 N -0.734 5.734 14 C 0.127 3.873 15 H 0.085 0.915 16 C -0.150 4.150 17 C 0.042 3.958 18 O -0.397 6.397 19 C 0.038 3.962 20 H 0.035 0.965 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.270 0.730 24 H 0.401 0.599 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.054 -12.176 -3.530 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.216 5.216 3 C -0.454 4.454 4 H 0.088 0.912 5 C -0.211 4.211 6 N -0.548 5.548 7 Si 0.817 3.183 8 H -0.198 1.198 9 H -0.191 1.191 10 H -0.204 1.204 11 C 0.358 3.642 12 O -0.550 6.550 13 N -0.393 5.393 14 C 0.020 3.980 15 H 0.103 0.897 16 C -0.188 4.188 17 C -0.035 4.035 18 O -0.316 6.316 19 C -0.041 4.041 20 H 0.054 0.946 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.238 0.762 25 H 0.108 0.892 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.483 -12.038 -3.249 12.713 hybrid contribution 0.052 1.102 0.020 1.103 sum -2.432 -10.936 -3.229 11.659 Atomic orbital electron populations 1.21262 0.79689 1.00582 0.99842 1.42937 1.06109 1.03184 1.69342 1.19508 1.00699 0.85383 1.39806 0.91218 1.26086 0.97391 1.02925 0.94677 1.70105 1.20090 1.30421 1.34193 0.84882 0.78240 0.77213 0.78001 1.19753 1.19112 1.20427 1.16351 0.85199 0.81449 0.81234 1.90669 1.13965 1.87135 1.63208 1.45109 1.09384 1.03420 1.81383 1.22178 0.96673 0.83088 0.96038 0.89725 1.23259 1.01103 0.94661 0.99808 1.23676 1.03832 0.93677 0.82280 1.89116 1.53406 1.52734 1.36373 1.23826 0.90910 0.92918 0.96414 0.94620 0.92088 0.92306 0.92081 0.76238 0.89239 0.87142 0.86920 0.90183 0.90061 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.90 8.34 127.77 1.07 6.96 16 2 N -0.49 -26.46 3.01 -675.93 -2.04 -28.49 16 3 C -0.33 -19.16 9.23 84.01 0.78 -18.39 16 4 H 0.07 4.36 7.46 -2.91 -0.02 4.34 16 5 C -0.01 -0.59 5.06 84.90 0.43 -0.16 16 6 N -0.91 -50.04 10.84 21.65 0.23 -49.81 16 7 Si 0.99 43.87 29.57 68.60 2.03 45.90 16 8 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 C 0.66 33.62 8.23 179.05 1.47 35.09 16 12 O -0.66 -38.98 15.71 -3.96 -0.06 -39.04 16 13 N -0.73 -28.27 4.95 -452.95 -2.24 -30.51 16 14 C 0.13 3.98 3.48 46.01 0.16 4.14 16 15 H 0.08 2.92 7.56 -2.39 -0.02 2.90 16 16 C -0.15 -3.07 6.85 31.61 0.22 -2.85 16 17 C 0.04 0.79 7.63 72.49 0.55 1.35 16 18 O -0.40 -11.55 11.65 -148.98 -1.74 -13.28 16 19 C 0.04 1.19 7.35 72.49 0.53 1.72 16 20 H 0.04 1.68 7.85 -2.39 -0.02 1.66 16 21 H 0.06 2.95 6.78 -2.39 -0.02 2.93 16 22 H 0.06 2.12 6.64 -2.39 -0.02 2.10 16 23 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 24 H 0.40 13.53 6.23 -92.71 -0.58 12.95 16 25 H 0.09 1.71 7.70 -2.39 -0.02 1.69 16 26 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 2.43 8.06 -2.38 -0.02 2.41 16 Total: -1.00 -71.53 252.37 1.96 -69.57 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.57 Total: 17.80 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: 5.21 Total: 27.87 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.04 Total: -108.81 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -1.80 Total: -52.33 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.53 1.96 -69.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312181.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.248 kcal (2) G-P(sol) polarization free energy of solvation -71.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds