Wall clock time and date at job start Mon Mar 30 2020 02:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37185 * 119.99926 * 2 1 4 4 H 1.08001 * 119.99838 * 156.58421 * 3 2 1 5 5 C 1.38878 * 120.00131 * 336.86171 * 3 2 1 6 6 N 1.31479 * 119.99992 * 344.55632 * 5 3 2 7 7 Si 1.86797 * 120.00101 * 164.55913 * 5 3 2 8 8 H 1.48496 * 109.47034 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47085 * 119.99571 * 7 5 3 10 10 H 1.48495 * 109.47190 * 239.99697 * 7 5 3 11 11 C 1.34780 * 119.99841 * 179.97438 * 2 1 3 12 12 O 1.21577 * 119.99922 * 179.97438 * 11 2 1 13 13 N 1.34779 * 120.00094 * 359.97438 * 11 2 1 14 14 C 1.46495 * 119.99976 * 179.97438 * 13 11 2 15 15 H 1.08996 * 110.43715 * 36.09606 * 14 13 11 16 16 C 1.54806 * 110.48736 * 158.78463 * 14 13 11 17 17 C 1.55001 * 102.09566 * 97.79691 * 16 14 13 18 18 O 1.44374 * 103.48928 * 37.02227 * 17 16 14 19 19 C 1.43745 * 106.97726 * 319.94320 * 18 17 16 20 20 H 1.09001 * 109.47167 * 94.16639 * 1 2 3 21 21 H 1.09008 * 109.47344 * 214.16520 * 1 2 3 22 22 H 1.09000 * 109.47146 * 334.16638 * 1 2 3 23 23 H 0.96995 * 120.00217 * 180.02562 * 6 5 3 24 24 H 0.97004 * 119.99629 * 0.02562 * 13 11 2 25 25 H 1.09005 * 110.90564 * 215.99621 * 16 14 13 26 26 H 1.08994 * 110.90851 * 339.59436 * 16 14 13 27 27 H 1.08997 * 110.61729 * 278.52205 * 17 16 14 28 28 H 1.08999 * 110.61665 * 155.52718 * 17 16 14 29 29 H 1.09006 * 109.87665 * 267.09133 * 19 18 17 30 30 H 1.08996 * 109.88329 * 145.93945 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1510 1.1881 0.0000 4 1 3.1643 1.2266 0.3717 5 6 1.5404 2.3424 -0.4726 6 7 0.4423 2.2584 -1.1908 7 14 2.2792 4.0144 -0.0880 8 1 3.5052 3.8372 0.7310 9 1 2.6259 4.7058 -1.3557 10 1 1.2937 4.8293 0.6668 11 6 2.1389 -1.1672 0.0005 12 8 3.3547 -1.1673 0.0001 13 7 1.4650 -2.3345 0.0016 14 6 2.1975 -3.6031 0.0016 15 1 3.1029 -3.5198 0.6025 16 6 1.2980 -4.7481 0.5275 17 6 0.7920 -5.3939 -0.7875 18 8 1.9346 -5.3085 -1.6660 19 6 2.5435 -4.0263 -1.4393 20 1 -0.3633 -0.0747 -1.0250 21 1 -0.3634 -0.8504 0.5772 22 1 -0.3633 0.9250 0.4478 23 1 0.0160 3.0646 -1.5212 24 1 0.4950 -2.3344 0.0016 25 1 1.8786 -5.4612 1.1128 26 1 0.4670 -4.3528 1.1117 27 1 -0.0475 -4.8299 -1.1938 28 1 0.5124 -6.4342 -0.6214 29 1 2.1458 -3.2971 -2.1453 30 1 3.6247 -4.1040 -1.5533 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087312184.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:38 Heat of formation + Delta-G solvation = -82.199684 kcal Electronic energy + Delta-G solvation = -14745.499132 eV Core-core repulsion = 12154.644093 eV Total energy + Delta-G solvation = -2590.855039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20689 -39.83330 -36.77121 -35.40590 -33.56486 -31.51366 -29.58646 -28.11184 -26.26748 -23.78986 -22.44752 -21.34690 -19.27226 -18.67396 -17.57937 -17.14203 -16.71347 -16.31202 -15.95424 -15.79303 -15.12135 -14.61770 -13.97492 -13.89330 -13.39041 -13.23741 -13.01277 -12.68080 -12.61540 -12.38410 -12.16667 -12.09198 -12.01432 -10.98540 -10.87548 -10.72046 -10.04010 -9.57866 -8.29259 -5.90682 1.40334 1.42870 1.56826 2.09130 2.38024 2.49477 3.01790 3.15959 3.56638 3.63311 3.90097 4.01999 4.25490 4.33471 4.52637 4.72329 4.81962 4.89355 4.95350 4.98531 5.05533 5.31066 5.49209 5.64036 5.85982 5.93730 6.37353 6.86931 7.25179 7.64520 8.18022 8.76929 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.063517 B = 0.007355 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.724008 B = 3806.208790 C = 3953.187369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.490 5.490 3 C -0.327 4.327 4 H 0.069 0.931 5 C -0.009 4.009 6 N -0.905 5.905 7 Si 0.990 3.010 8 H -0.274 1.274 9 H -0.279 1.279 10 H -0.266 1.266 11 C 0.655 3.345 12 O -0.664 6.664 13 N -0.734 5.734 14 C 0.129 3.871 15 H 0.080 0.920 16 C -0.147 4.147 17 C 0.040 3.960 18 O -0.394 6.394 19 C 0.041 3.959 20 H 0.037 0.963 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.270 0.730 24 H 0.403 0.597 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.042 0.958 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 -11.052 3.273 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.214 5.214 3 C -0.456 4.456 4 H 0.087 0.913 5 C -0.209 4.209 6 N -0.545 5.545 7 Si 0.814 3.186 8 H -0.198 1.198 9 H -0.204 1.204 10 H -0.191 1.191 11 C 0.357 3.643 12 O -0.550 6.550 13 N -0.394 5.394 14 C 0.023 3.977 15 H 0.098 0.902 16 C -0.185 4.185 17 C -0.036 4.036 18 O -0.314 6.314 19 C -0.038 4.038 20 H 0.056 0.944 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.240 0.760 25 H 0.126 0.874 26 H 0.123 0.877 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.060 0.940 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.077 -11.054 3.040 12.168 hybrid contribution -0.058 1.268 -0.062 1.270 sum -4.134 -9.787 2.979 11.034 Atomic orbital electron populations 1.21293 0.79555 1.00660 1.00079 1.42949 1.06164 1.03121 1.69171 1.19492 0.99736 0.84954 1.41409 0.91263 1.26023 0.97385 1.02720 0.94775 1.70115 1.20919 1.30185 1.33273 0.84924 0.78284 0.77341 0.78037 1.19842 1.20446 1.19085 1.16332 0.85185 0.81427 0.81355 1.90680 1.14083 1.87088 1.63109 1.45062 1.09404 1.03265 1.81625 1.22058 0.96608 0.83255 0.95782 0.90164 1.23413 1.00234 0.96085 0.98758 1.23839 0.88508 1.03357 0.87868 1.88841 1.44034 1.34798 1.63678 1.23567 0.98706 0.85104 0.96397 0.94414 0.91919 0.92243 0.92044 0.76013 0.87409 0.87666 0.91702 0.85914 0.93957 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.59 8.38 127.77 1.07 6.66 16 2 N -0.49 -25.83 3.01 -675.89 -2.04 -27.87 16 3 C -0.33 -19.08 9.25 84.01 0.78 -18.30 16 4 H 0.07 4.32 7.44 -2.91 -0.02 4.30 16 5 C -0.01 -0.46 4.98 84.90 0.42 -0.04 16 6 N -0.91 -49.09 10.93 21.65 0.24 -48.85 16 7 Si 0.99 43.38 29.58 68.60 2.03 45.41 16 8 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 9 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 10 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 11 C 0.65 32.95 8.23 179.05 1.47 34.43 16 12 O -0.66 -38.77 15.75 -3.96 -0.06 -38.83 16 13 N -0.73 -27.10 4.88 -453.10 -2.21 -29.31 16 14 C 0.13 4.06 3.35 45.98 0.15 4.21 16 15 H 0.08 2.82 7.66 -2.39 -0.02 2.81 16 16 C -0.15 -2.96 6.78 31.90 0.22 -2.74 16 17 C 0.04 0.81 7.72 72.67 0.56 1.37 16 18 O -0.39 -11.37 11.52 -148.98 -1.72 -13.09 16 19 C 0.04 1.33 7.50 72.36 0.54 1.88 16 20 H 0.04 1.71 7.85 -2.39 -0.02 1.69 16 21 H 0.06 2.12 6.59 -2.38 -0.02 2.11 16 22 H 0.06 2.79 6.79 -2.39 -0.02 2.77 16 23 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 24 H 0.40 12.47 6.35 -92.71 -0.59 11.88 16 25 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.10 1.76 7.96 -2.39 -0.02 1.74 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.57 7.93 -2.38 -0.02 1.55 16 30 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -70.72 252.63 2.01 -68.71 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.56 Total: 16.37 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 5.22 Total: 27.46 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -4.01 Total: -106.03 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -1.78 Total: -51.93 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.72 2.01 -68.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087312184.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.489 kcal (2) G-P(sol) polarization free energy of solvation -70.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds