Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.62947 * 2 1 4 4 O 1.43372 * 109.62739 * 239.75977 * 2 1 3 5 5 C 1.44235 * 107.30421 * 240.82640 * 4 2 1 6 6 C 1.54918 * 103.05799 * 21.38202 * 5 4 2 7 7 H 1.08993 * 110.97454 * 82.61915 * 6 5 4 8 8 C 1.53000 * 110.97668 * 206.36189 * 6 5 4 9 9 C 1.53001 * 109.46886 * 181.88513 * 8 6 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47093 * 90.00088 * 15 13 11 17 17 H 1.48495 * 109.46891 * 210.00496 * 15 13 11 18 18 H 1.48504 * 109.47189 * 330.00185 * 15 13 11 19 19 O 1.43753 * 109.63346 * 120.39681 * 2 1 3 20 20 H 1.09004 * 109.47076 * 299.60324 * 1 2 3 21 21 H 1.08996 * 109.47442 * 59.60132 * 1 2 3 22 22 H 1.09005 * 109.47622 * 179.60577 * 1 2 3 23 23 H 1.09000 * 109.47294 * 180.39766 * 3 2 1 24 24 H 1.09005 * 109.47378 * 300.39456 * 3 2 1 25 25 H 1.08997 * 109.47541 * 60.39592 * 3 2 1 26 26 H 1.09002 * 110.67753 * 263.00196 * 5 4 2 27 27 H 1.09003 * 110.73148 * 139.78751 * 5 4 2 28 28 H 1.09001 * 109.46741 * 61.88907 * 8 6 5 29 29 H 1.09002 * 109.47398 * 301.89009 * 8 6 5 30 30 H 1.09001 * 109.46652 * 60.00345 * 9 8 6 31 31 H 1.08992 * 109.47514 * 300.00434 * 9 8 6 32 32 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 34 34 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 8 2.0116 -0.6801 -1.1666 5 6 2.7880 -1.8088 -0.7154 6 6 2.2651 -2.0401 0.7244 7 1 1.3458 -2.6256 0.7163 8 6 3.3310 -2.7113 1.5930 9 6 2.7636 -2.9657 2.9909 10 6 3.8297 -3.6363 3.8597 11 6 3.2706 -3.8875 5.2365 12 1 2.2563 -3.5981 5.4684 13 6 4.0541 -4.4866 6.1999 14 7 3.5660 -4.7062 7.4012 15 14 5.8083 -4.9878 5.7984 16 1 6.7271 -3.8623 6.1053 17 1 6.1841 -6.1704 6.6140 18 1 5.9079 -5.3291 4.3565 19 8 2.0130 -0.6851 1.1678 20 1 -0.3633 0.5077 0.8936 21 1 -0.3634 0.5200 -0.8863 22 1 -0.3634 -1.0276 -0.0071 23 1 3.1339 1.4380 -0.0071 24 1 1.6763 1.9579 -0.8864 25 1 1.6879 1.9538 0.8935 26 1 3.8505 -1.5657 -0.7050 27 1 2.5977 -2.6822 -1.3393 28 1 4.2019 -2.0602 1.6673 29 1 3.6235 -3.6593 1.1415 30 1 1.8926 -3.6168 2.9165 31 1 2.4711 -2.0178 3.4424 32 1 4.1226 -4.5843 3.4083 33 1 4.7004 -2.9848 3.9340 34 1 4.1174 -5.1274 8.0791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104393271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = -114.805867 kcal Electronic energy + Delta-G solvation = -14594.416880 eV Core-core repulsion = 12105.688274 eV Total energy + Delta-G solvation = -2488.728606 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56425 -35.54629 -34.53479 -33.08631 -31.80687 -29.45112 -27.52688 -26.68975 -23.53608 -21.30470 -21.11132 -20.02354 -17.40490 -16.68906 -16.26780 -15.29633 -14.90541 -14.18488 -14.04393 -13.78373 -13.36174 -12.87211 -12.71863 -12.48466 -12.26072 -12.20889 -11.95915 -11.78716 -11.50914 -11.24739 -10.93589 -10.72932 -10.05929 -9.90527 -9.68109 -9.64482 -9.44096 -9.13665 -8.50789 -6.01171 -3.98728 3.32568 3.39197 3.39500 3.43019 3.95592 4.47753 4.53051 4.76750 4.83143 4.97375 5.12371 5.31057 5.32834 5.46653 5.50270 5.51246 5.61727 5.67274 5.80977 5.95870 5.99512 6.05487 6.10520 6.28964 6.61594 6.70580 6.96185 7.16189 7.36066 7.48482 7.83306 8.58389 9.04542 9.61571 11.12550 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054085 B = 0.005807 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.584091 B = 4820.262973 C = 5023.556733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.246 3.754 3 C -0.153 4.153 4 O -0.386 6.386 5 C 0.023 3.977 6 C 0.050 3.950 7 H 0.083 0.917 8 C -0.115 4.115 9 C -0.100 4.100 10 C -0.015 4.015 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 O -0.361 6.361 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.014 0.986 33 H 0.011 0.989 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 7.896 -17.045 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.169 3.831 3 C -0.210 4.210 4 O -0.307 6.307 5 C -0.053 4.053 6 C -0.007 4.007 7 H 0.101 0.899 8 C -0.152 4.152 9 C -0.138 4.138 10 C -0.052 4.052 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 O -0.282 6.282 20 H 0.095 0.905 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.032 0.968 33 H 0.029 0.971 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.525 7.980 -16.865 18.828 hybrid contribution 0.894 -0.450 -0.023 1.001 sum -1.630 7.530 -16.888 18.562 Atomic orbital electron populations 1.22362 0.94083 1.03272 1.03019 1.23357 0.92864 0.91502 0.75353 1.22052 1.02427 0.93647 1.02902 1.88840 1.69678 1.42245 1.29958 1.24282 0.96513 0.89245 0.95252 1.24079 0.99553 0.84453 0.92662 0.89947 1.21748 0.96757 0.99598 0.97104 1.21420 0.99272 1.00876 0.92191 1.19587 0.94645 0.95237 0.95737 1.21179 1.01089 1.39213 0.94232 0.91081 1.25049 0.98328 0.95357 0.94883 1.69923 1.37018 1.43973 1.03558 0.86760 0.85362 0.78284 0.78753 1.20323 1.21437 1.19059 1.89346 1.85721 1.21997 1.31105 0.90547 0.91116 0.91850 0.91541 0.90874 0.90663 0.90622 0.88506 0.91237 0.90609 0.92884 0.92141 0.96759 0.97099 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.20 37.16 0.34 -1.56 16 2 C 0.25 3.24 1.47 -26.74 -0.04 3.20 16 3 C -0.15 -1.71 9.24 37.15 0.34 -1.36 16 4 O -0.39 -5.20 10.86 -59.04 -0.64 -5.85 16 5 C 0.02 0.28 7.55 38.17 0.29 0.57 16 6 C 0.05 0.70 3.45 -25.72 -0.09 0.62 16 7 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 8 C -0.11 -1.81 5.00 -26.73 -0.13 -1.95 16 9 C -0.10 -2.02 5.09 -26.73 -0.14 -2.16 16 10 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 11 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 12 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 15 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 19 O -0.36 -5.68 10.55 -59.04 -0.62 -6.31 16 20 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 32 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 33 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 280.45 15.07 4.23 4.23 Total: -1.00 -31.99 280.45 -6.74 -38.73 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -5.84 Total: -3.69 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 0.03 Total: -16.81 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.68 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.26 Total: -12.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.99 -6.74 -38.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104393271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.077 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds