Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.62947 * 2 1 4 4 O 1.43372 * 109.62739 * 239.75977 * 2 1 3 5 5 C 1.44235 * 107.30421 * 240.82640 * 4 2 1 6 6 C 1.54918 * 103.05799 * 21.38202 * 5 4 2 7 7 H 1.08993 * 110.97454 * 82.61915 * 6 5 4 8 8 C 1.53000 * 110.97668 * 206.36189 * 6 5 4 9 9 C 1.53001 * 109.46886 * 181.88513 * 8 6 5 10 10 C 1.53000 * 109.46886 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46912 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99751 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00001 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99923 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 120.00006 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47093 * 90.00088 * 15 13 11 17 17 H 1.48495 * 109.46891 * 210.00496 * 15 13 11 18 18 H 1.48504 * 109.47189 * 330.00185 * 15 13 11 19 19 O 1.43753 * 109.63346 * 120.39681 * 2 1 3 20 20 H 1.09004 * 109.47076 * 299.60324 * 1 2 3 21 21 H 1.08996 * 109.47442 * 59.60132 * 1 2 3 22 22 H 1.09005 * 109.47622 * 179.60577 * 1 2 3 23 23 H 1.09000 * 109.47294 * 180.39766 * 3 2 1 24 24 H 1.09005 * 109.47378 * 300.39456 * 3 2 1 25 25 H 1.08997 * 109.47541 * 60.39592 * 3 2 1 26 26 H 1.09002 * 110.67753 * 263.00196 * 5 4 2 27 27 H 1.09003 * 110.73148 * 139.78751 * 5 4 2 28 28 H 1.09001 * 109.46741 * 61.88907 * 8 6 5 29 29 H 1.09002 * 109.47398 * 301.89009 * 8 6 5 30 30 H 1.09001 * 109.46652 * 60.00345 * 9 8 6 31 31 H 1.08992 * 109.47514 * 300.00434 * 9 8 6 32 32 H 1.09002 * 109.47398 * 300.00496 * 10 9 8 33 33 H 1.09001 * 109.47194 * 60.00677 * 10 9 8 34 34 H 0.97000 * 119.99684 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4410 0.0000 4 8 2.0116 -0.6801 -1.1666 5 6 2.7880 -1.8088 -0.7154 6 6 2.2651 -2.0401 0.7244 7 1 1.3458 -2.6256 0.7163 8 6 3.3310 -2.7113 1.5930 9 6 2.7636 -2.9657 2.9909 10 6 3.8297 -3.6363 3.8597 11 6 3.2706 -3.8875 5.2365 12 1 2.2563 -3.5981 5.4684 13 6 4.0541 -4.4866 6.1999 14 7 3.5660 -4.7062 7.4012 15 14 5.8083 -4.9878 5.7984 16 1 6.7271 -3.8623 6.1053 17 1 6.1841 -6.1704 6.6140 18 1 5.9079 -5.3291 4.3565 19 8 2.0130 -0.6851 1.1678 20 1 -0.3633 0.5077 0.8936 21 1 -0.3634 0.5200 -0.8863 22 1 -0.3634 -1.0276 -0.0071 23 1 3.1339 1.4380 -0.0071 24 1 1.6763 1.9579 -0.8864 25 1 1.6879 1.9538 0.8935 26 1 3.8505 -1.5657 -0.7050 27 1 2.5977 -2.6822 -1.3393 28 1 4.2019 -2.0602 1.6673 29 1 3.6235 -3.6593 1.1415 30 1 1.8926 -3.6168 2.9165 31 1 2.4711 -2.0178 3.4424 32 1 4.1226 -4.5843 3.4083 33 1 4.7004 -2.9848 3.9340 34 1 4.1174 -5.1274 8.0791 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104393271.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = -135.571018 kcal Electronic energy + Delta-G solvation = -14595.317325 eV Core-core repulsion = 12105.688274 eV Total energy + Delta-G solvation = -2489.629050 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.58282 -36.92616 -35.80456 -34.72875 -33.39592 -30.92361 -28.42423 -28.14340 -25.12211 -22.62806 -22.13314 -21.72563 -18.90825 -18.42956 -17.29463 -16.48498 -16.18148 -15.97576 -15.40483 -14.93196 -14.75082 -14.39800 -13.91993 -13.80920 -13.50571 -13.19040 -13.11306 -13.07249 -12.75972 -12.60794 -12.45029 -12.42031 -11.77612 -11.45487 -11.35299 -11.15225 -11.06962 -10.76439 -10.61444 -8.29536 -6.34216 1.36468 1.38604 1.50908 2.36913 2.41675 2.98935 3.05828 3.46331 3.83117 3.87413 3.98664 4.07296 4.29894 4.34216 4.51172 4.63712 4.65518 4.71824 4.76148 4.76804 4.86215 4.95542 5.08340 5.11591 5.13336 5.17673 5.23593 5.54688 5.63523 5.67886 6.17161 6.29249 6.74132 7.30497 8.87790 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.054085 B = 0.005807 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.584091 B = 4820.262973 C = 5023.556733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.235 3.765 3 C -0.152 4.152 4 O -0.394 6.394 5 C 0.027 3.973 6 C 0.047 3.953 7 H 0.085 0.915 8 C -0.104 4.104 9 C -0.093 4.093 10 C -0.012 4.012 11 C -0.537 4.537 12 H 0.025 0.975 13 C 0.000 4.000 14 N -0.955 5.955 15 Si 0.956 3.044 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.241 1.241 19 O -0.389 6.389 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.017 0.983 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 7.799 -19.353 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.159 3.841 3 C -0.209 4.209 4 O -0.316 6.316 5 C -0.049 4.049 6 C -0.010 4.010 7 H 0.103 0.897 8 C -0.142 4.142 9 C -0.131 4.131 10 C -0.049 4.049 11 C -0.575 4.575 12 H 0.044 0.956 13 C -0.196 4.196 14 N -0.596 5.596 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.164 1.164 19 O -0.311 6.311 20 H 0.096 0.904 21 H 0.107 0.893 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.035 0.965 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.095 7.895 -19.196 20.785 hybrid contribution 0.334 -0.386 0.756 0.912 sum -0.761 7.509 -18.440 19.925 Atomic orbital electron populations 1.22363 0.92956 1.03270 1.03975 1.23668 0.93849 0.92024 0.74582 1.22078 1.02066 0.92794 1.03976 1.88825 1.70023 1.42686 1.30087 1.24369 0.96693 0.89826 0.93983 1.24081 0.99271 0.83981 0.93704 0.89691 1.21621 0.96987 1.01120 0.94445 1.21262 0.98231 0.99144 0.94424 1.19554 0.95662 0.96225 0.93506 1.21568 0.99554 1.39197 0.97201 0.95622 1.26117 1.03855 0.95213 0.94448 1.70088 1.39288 1.45190 1.05000 0.85571 0.78477 0.78150 0.79913 1.19278 1.20893 1.16399 1.89326 1.86135 1.22849 1.32805 0.90403 0.89335 0.92362 0.92132 0.89007 0.90384 0.89872 0.85892 0.91102 0.88178 0.93351 0.94387 0.95491 0.96472 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.20 71.98 0.66 -2.87 16 2 C 0.24 5.82 1.47 30.59 0.04 5.87 16 3 C -0.15 -3.15 9.24 71.98 0.66 -2.49 16 4 O -0.39 -9.73 10.86 -126.22 -1.37 -11.10 16 5 C 0.03 0.58 7.55 72.64 0.55 1.13 16 6 C 0.05 1.24 3.45 31.25 0.11 1.34 16 7 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 8 C -0.10 -3.08 5.00 30.59 0.15 -2.92 16 9 C -0.09 -3.73 5.09 30.59 0.16 -3.57 16 10 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 11 C -0.54 -32.15 9.66 25.60 0.25 -31.90 16 12 H 0.03 1.70 7.99 -2.91 -0.02 1.67 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 14 N -0.95 -61.44 13.96 21.45 0.30 -61.14 16 15 Si 0.96 44.72 27.47 68.60 1.88 46.61 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 18 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 19 O -0.39 -11.94 10.55 -126.22 -1.33 -13.27 16 20 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 23 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.08 1.65 8.04 -2.39 -0.02 1.63 16 27 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.04 1.66 8.03 -2.39 -0.02 1.64 16 32 H 0.03 1.21 7.20 -2.39 -0.02 1.20 16 33 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 34 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -69.90 280.45 3.63 -66.27 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 0.98 Total: 8.04 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.17 Total: -35.41 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.30 Total: -61.14 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -2.70 Total: -24.37 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.61 kcal Total: -69.90 3.63 -66.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104393271.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.302 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds