Wall clock time and date at job start Mon Mar 30 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 C 1.32154 * 124.46820 * 95.02367 * 11 10 9 13 13 C 1.51090 * 108.27108 * 180.02562 * 12 11 10 14 14 C 1.50928 * 105.46066 * 0.02562 * 13 12 11 15 15 C 1.37549 * 133.20648 * 180.02562 * 14 13 12 16 16 C 1.38465 * 119.94951 * 179.20805 * 15 14 13 17 17 C 1.38365 * 120.11070 * 0.68616 * 16 15 14 18 18 C 1.37911 * 120.36704 * 359.53519 * 17 16 15 19 19 C 1.39620 * 106.30249 * 359.72511 * 14 13 12 20 20 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 23 23 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 24 24 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 25 25 H 1.07996 * 125.86309 * 0.03761 * 12 11 10 26 26 H 1.09001 * 110.24636 * 119.00087 * 13 12 11 27 27 H 1.09004 * 110.24273 * 240.91875 * 13 12 11 28 28 H 1.08008 * 120.02391 * 359.96949 * 15 14 13 29 29 H 1.08002 * 119.94602 * 180.23949 * 16 15 14 30 30 H 1.07996 * 119.82212 * 179.55273 * 17 16 15 31 31 H 1.07997 * 120.05162 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 6 1.2003 -5.6629 -1.0839 13 6 0.4425 -6.9006 -0.6635 14 6 0.3373 -6.8168 0.8398 15 6 -0.2303 -7.6322 1.7910 16 6 -0.1509 -7.2908 3.1306 17 6 0.4862 -6.1236 3.5129 18 6 1.0544 -5.2972 2.5662 19 6 0.9871 -5.6387 1.2130 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8721 -3.6042 -0.8894 24 1 2.8721 -3.6043 0.8905 25 1 1.4593 -5.3932 -2.0970 26 1 -0.5514 -6.9046 -1.1112 27 1 0.9910 -7.7961 -0.9557 28 1 -0.7269 -8.5443 1.4943 29 1 -0.5932 -7.9331 3.8778 30 1 0.5391 -5.8583 4.5584 31 1 1.5507 -4.3875 2.8704 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104836293.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:27 Heat of formation + Delta-G solvation = 26.903741 kcal Electronic energy + Delta-G solvation = -13219.843269 eV Core-core repulsion = 11044.568572 eV Total energy + Delta-G solvation = -2175.274696 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98243 -35.99579 -33.62316 -31.78740 -30.25401 -28.47427 -26.93255 -24.26318 -22.18481 -21.04266 -20.74686 -18.40043 -16.36269 -15.38763 -15.02296 -14.85837 -14.48168 -14.18451 -13.61589 -13.03573 -12.64001 -12.34333 -11.94036 -11.78937 -11.47850 -11.25154 -10.98199 -10.87595 -10.60331 -10.40681 -9.85809 -9.74683 -9.13462 -8.98260 -8.49854 -8.32822 -7.66709 -5.97550 -4.00643 1.27096 1.65849 2.90343 3.33038 3.39188 3.42658 4.20731 4.47756 4.69815 4.96760 5.19576 5.24467 5.34149 5.37799 5.67211 5.73011 5.81823 5.87249 6.08687 6.16838 6.24833 6.39300 6.63759 6.68725 6.73711 6.91385 6.97393 7.07766 7.26151 7.40825 7.71382 7.86697 8.03168 8.43504 9.06666 9.63221 11.13517 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042059 B = 0.006765 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.572613 B = 4137.733764 C = 4488.081065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.071 4.071 11 C -0.067 4.067 12 C -0.183 4.183 13 C -0.058 4.058 14 C -0.108 4.108 15 C -0.108 4.108 16 C -0.127 4.127 17 C -0.125 4.125 18 C -0.092 4.092 19 C -0.055 4.055 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.141 0.859 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -14.083 2.648 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.108 4.108 11 C -0.067 4.067 12 C -0.201 4.201 13 C -0.094 4.094 14 C -0.108 4.108 15 C -0.126 4.126 16 C -0.145 4.145 17 C -0.143 4.143 18 C -0.110 4.110 19 C -0.055 4.055 20 H 0.070 0.930 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.367 -13.968 2.659 14.224 hybrid contribution 0.323 1.051 0.050 1.100 sum 0.690 -12.917 2.709 13.216 Atomic orbital electron populations 1.69979 1.06058 1.26558 1.50771 1.25027 0.94832 0.99218 0.95348 0.86601 0.79844 0.83501 0.78098 1.20661 1.21235 1.19865 1.21270 0.93035 0.91026 1.50675 0.92632 1.19034 0.93689 0.90410 0.97468 1.20577 0.98220 0.90998 1.01031 1.21038 0.98022 0.96312 0.91349 1.23397 1.01938 0.96283 0.98481 1.19881 1.00642 0.97981 0.90914 1.20547 0.98689 0.95798 0.95773 1.20210 1.00783 0.99360 0.92207 1.21042 1.00532 0.97440 0.95452 1.20965 0.99159 0.94987 0.99198 1.21028 0.98956 0.99386 0.91639 1.19844 0.97664 0.94715 0.93273 0.93017 0.96533 0.96496 0.92188 0.92463 0.84157 0.88943 0.89124 0.86515 0.86244 0.86138 0.85637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.83 4.96 -27.88 -0.14 0.69 16 10 C -0.07 -1.53 5.56 -27.88 -0.16 -1.69 16 11 C -0.07 -1.30 5.39 -102.79 -0.55 -1.85 16 12 C -0.18 -3.04 10.91 -36.04 -0.39 -3.44 16 13 C -0.06 -0.82 6.76 -28.73 -0.19 -1.02 16 14 C -0.11 -1.72 6.38 -104.25 -0.66 -2.39 16 15 C -0.11 -1.48 10.03 -39.75 -0.40 -1.88 16 16 C -0.13 -1.67 10.06 -39.45 -0.40 -2.07 16 17 C -0.13 -1.81 10.02 -39.65 -0.40 -2.21 16 18 C -0.09 -1.59 10.08 -39.15 -0.39 -1.99 16 19 C -0.05 -1.01 6.17 -105.07 -0.65 -1.66 16 20 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 24 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 26 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 270.19 15.07 4.07 4.07 Total: -1.00 -31.39 270.19 -9.15 -40.54 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.19 Total: -1.58 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: -4.75 Total: -33.24 kcal Atomic # 7 Polarization: -27.36 SS G_CDS: 0.74 Total: -26.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.39 -9.15 -40.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104836293.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.443 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds