Wall clock time and date at job start Mon Mar 30 2020 02:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48504 * 109.47092 * 269.99391 * 3 2 1 5 5 H 1.48498 * 109.47340 * 29.99642 * 3 2 1 6 6 H 1.48501 * 109.47391 * 149.99714 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 C 1.32154 * 124.46820 * 95.02367 * 11 10 9 13 13 C 1.51090 * 108.27108 * 180.02562 * 12 11 10 14 14 C 1.50928 * 105.46066 * 0.02562 * 13 12 11 15 15 C 1.37549 * 133.20648 * 180.02562 * 14 13 12 16 16 C 1.38465 * 119.94951 * 179.20805 * 15 14 13 17 17 C 1.38365 * 120.11070 * 0.68616 * 16 15 14 18 18 C 1.37911 * 120.36704 * 359.53519 * 17 16 15 19 19 C 1.39620 * 106.30249 * 359.72511 * 14 13 12 20 20 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 22 22 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 23 23 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 24 24 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 25 25 H 1.07996 * 125.86309 * 0.03761 * 12 11 10 26 26 H 1.09001 * 110.24636 * 119.00087 * 13 12 11 27 27 H 1.09004 * 110.24273 * 240.91875 * 13 12 11 28 28 H 1.08008 * 120.02391 * 359.96949 * 15 14 13 29 29 H 1.08002 * 119.94602 * 180.23949 * 16 15 14 30 30 H 1.07996 * 119.82212 * 179.55273 * 17 16 15 31 31 H 1.07997 * 120.05162 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4920 -4.9672 0.0012 12 6 1.2003 -5.6629 -1.0839 13 6 0.4425 -6.9006 -0.6635 14 6 0.3373 -6.8168 0.8398 15 6 -0.2303 -7.6322 1.7910 16 6 -0.1509 -7.2908 3.1306 17 6 0.4862 -6.1236 3.5129 18 6 1.0544 -5.2972 2.5662 19 6 0.9871 -5.6387 1.2130 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5568 0.8903 23 1 2.8721 -3.6042 -0.8894 24 1 2.8721 -3.6043 0.8905 25 1 1.4593 -5.3932 -2.0970 26 1 -0.5514 -6.9046 -1.1112 27 1 0.9910 -7.7961 -0.9557 28 1 -0.7269 -8.5443 1.4943 29 1 -0.5932 -7.9331 3.8778 30 1 0.5391 -5.8583 4.5584 31 1 1.5507 -4.3875 2.8704 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104836293.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:27 Heat of formation + Delta-G solvation = 10.541644 kcal Electronic energy + Delta-G solvation = -13220.552783 eV Core-core repulsion = 11044.568572 eV Total energy + Delta-G solvation = -2175.984210 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 214.105 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18373 -37.29381 -35.59316 -33.53448 -31.68048 -29.75384 -28.52819 -26.06917 -23.44208 -22.88390 -21.93725 -19.75529 -18.53216 -16.67513 -16.53073 -16.18573 -16.11930 -15.36099 -15.14838 -14.55911 -14.15729 -14.07931 -13.43552 -13.13877 -13.04148 -12.81724 -12.77999 -12.43012 -12.19433 -11.82125 -11.68882 -11.55240 -11.18760 -10.58977 -10.52948 -9.63481 -8.95353 -8.21967 -6.34987 0.07355 0.50857 1.37949 1.40219 1.51216 1.60894 2.39361 3.00095 3.10232 3.57316 3.71740 4.00402 4.15672 4.25644 4.44959 4.56496 4.67629 4.73125 4.77616 4.80777 4.87199 5.06572 5.11756 5.14643 5.42835 5.46388 5.55094 5.61002 5.73782 5.79146 5.80849 6.03230 6.14384 6.20419 6.81723 7.34611 8.89770 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.042059 B = 0.006765 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.572613 B = 4137.733764 C = 4488.081065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.042 3.958 10 C -0.056 4.056 11 C -0.113 4.113 12 C -0.165 4.165 13 C -0.054 4.054 14 C -0.119 4.119 15 C -0.105 4.105 16 C -0.121 4.121 17 C -0.128 4.128 18 C -0.126 4.126 19 C -0.092 4.092 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.017 1.017 23 H 0.065 0.935 24 H 0.051 0.949 25 H 0.154 0.846 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.142 0.858 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 -15.703 2.591 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.005 3.995 10 C -0.093 4.093 11 C -0.113 4.113 12 C -0.182 4.182 13 C -0.089 4.089 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.092 4.092 20 H 0.073 0.927 21 H 0.007 0.993 22 H 0.001 0.999 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.172 0.828 26 H 0.130 0.870 27 H 0.142 0.858 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.160 0.840 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.346 -15.602 2.600 15.820 hybrid contribution 0.287 1.491 0.076 1.520 sum 0.633 -14.111 2.676 14.376 Atomic orbital electron populations 1.70124 1.07953 1.27843 1.51495 1.26036 0.95783 1.03527 0.94521 0.85394 0.78593 0.78072 0.78673 1.19454 1.20635 1.18683 1.21707 0.93583 0.92243 1.50872 0.92017 1.18832 0.93908 0.92426 0.94346 1.20261 0.97158 0.91000 1.00918 1.20994 1.00656 0.96243 0.93437 1.23855 0.99572 0.96538 0.98267 1.19972 1.01508 0.97601 0.89864 1.20895 0.98651 0.95167 0.97168 1.20682 0.99630 0.99985 0.91924 1.21527 0.99055 0.96854 0.96385 1.21270 0.98506 0.95132 0.99714 1.21109 1.00922 0.99850 0.92519 1.20023 0.99587 0.96361 0.93233 0.92719 0.99302 0.99910 0.91613 0.93071 0.82843 0.86970 0.85803 0.82816 0.82388 0.83994 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.86 13.29 21.45 0.28 -58.57 16 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.55 -32.46 9.11 25.60 0.23 -32.23 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.04 2.38 4.96 29.85 0.15 2.52 16 10 C -0.06 -2.56 5.56 29.85 0.17 -2.39 16 11 C -0.11 -4.51 5.39 -18.43 -0.10 -4.61 16 12 C -0.16 -5.35 10.91 24.81 0.27 -5.08 16 13 C -0.05 -1.38 6.76 29.30 0.20 -1.18 16 14 C -0.12 -3.58 6.38 -19.62 -0.13 -3.71 16 15 C -0.10 -2.53 10.03 22.16 0.22 -2.30 16 16 C -0.12 -2.82 10.06 22.35 0.22 -2.59 16 17 C -0.13 -3.62 10.02 22.22 0.22 -3.40 16 18 C -0.13 -4.57 10.08 22.55 0.23 -4.34 16 19 C -0.09 -3.46 6.17 -20.15 -0.12 -3.59 16 20 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 21 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 23 H 0.07 2.82 8.12 -2.39 -0.02 2.81 16 24 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 25 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 26 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.12 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 29 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 30 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 31 H 0.10 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -70.75 270.19 5.43 -65.32 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.09 Total: 8.41 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 2.03 Total: -62.51 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.28 Total: -58.57 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -70.75 5.43 -65.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104836293.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.857 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds