Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 C 1.53001 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.22149 * 304.40035 * 4 3 2 6 6 C 1.52584 * 109.22383 * 63.76191 * 4 3 2 7 7 C 1.53102 * 109.95284 * 190.99538 * 6 4 3 8 8 S 1.82095 * 108.89158 * 296.98739 * 7 6 4 9 9 C 1.81743 * 102.08688 * 53.20255 * 8 7 6 10 10 H 1.09003 * 109.57359 * 186.89607 * 9 8 7 11 11 C 1.50699 * 109.57897 * 66.64591 * 9 8 7 12 12 H 1.08004 * 120.00319 * 245.47361 * 11 9 8 13 13 C 1.37875 * 120.00141 * 65.46326 * 11 9 8 14 14 N 1.31515 * 120.00292 * 5.50994 * 13 11 9 15 15 Si 1.86806 * 120.00152 * 185.22948 * 13 11 9 16 16 H 1.48496 * 109.46999 * 85.00043 * 15 13 11 17 17 H 1.48507 * 109.47020 * 205.00213 * 15 13 11 18 18 H 1.48498 * 109.46816 * 325.00101 * 15 13 11 19 19 C 1.52576 * 109.22326 * 184.99618 * 4 3 2 20 20 H 1.09005 * 109.47286 * 300.00329 * 1 2 3 21 21 H 1.08998 * 109.47367 * 60.00338 * 1 2 3 22 22 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.46994 * 239.99475 * 2 1 3 24 24 H 1.09002 * 109.46895 * 119.99815 * 2 1 3 25 25 H 1.09005 * 109.47330 * 59.99697 * 3 2 1 26 26 H 1.08998 * 109.46744 * 300.00044 * 3 2 1 27 27 H 1.08999 * 109.38671 * 311.14097 * 6 4 3 28 28 H 1.09001 * 109.39137 * 70.84886 * 6 4 3 29 29 H 1.08999 * 109.57405 * 56.77954 * 7 6 4 30 30 H 1.08997 * 109.57143 * 177.03619 * 7 6 4 31 31 H 0.96998 * 120.00275 * 179.72523 * 14 13 11 32 32 H 1.09005 * 109.39095 * 48.85954 * 19 4 3 33 33 H 1.08992 * 109.39595 * 289.15122 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9285 0.8612 0.8501 6 6 4.0730 0.8054 -1.2914 7 6 5.5789 0.5467 -1.1946 8 16 6.4405 2.1408 -1.0150 9 6 5.5781 2.8820 0.4027 10 1 5.9208 3.9071 0.5433 11 6 5.8656 2.0787 1.6449 12 1 5.0676 1.5449 2.1395 13 6 7.1474 2.0252 2.1499 14 7 8.0970 2.7599 1.6132 15 14 7.5337 0.9149 3.6017 16 1 7.8217 -0.4573 3.1125 17 1 8.7187 1.4412 4.3258 18 1 6.3679 0.8783 4.5208 19 6 4.0723 2.8778 0.1261 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.5534 -0.1387 -1.4553 28 1 3.8740 1.4763 -2.1271 29 1 5.7868 -0.0798 -0.3273 30 1 5.9219 0.0441 -2.0989 31 1 8.9979 2.7252 1.9710 32 1 3.5524 3.3728 0.9464 33 1 3.8734 3.4133 -0.8021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = -39.290705 kcal Electronic energy + Delta-G solvation = -12959.055580 eV Core-core repulsion = 10916.354429 eV Total energy + Delta-G solvation = -2042.701152 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.54808 -33.85557 -32.55549 -30.32674 -28.34564 -25.21680 -23.12219 -22.10524 -20.39927 -19.31680 -16.59203 -15.36402 -14.96066 -14.64325 -14.05073 -13.26843 -13.15566 -12.93411 -12.53109 -12.22547 -11.91522 -11.78245 -11.35584 -11.26667 -10.99337 -10.70708 -10.62270 -10.40211 -10.27471 -10.03664 -9.64508 -9.47026 -9.21953 -8.42957 -8.13875 -6.30128 -5.79215 -4.12162 3.24097 3.33503 3.34817 3.43938 4.27533 4.36863 5.09628 5.17061 5.32071 5.41970 5.49823 5.69774 5.75934 5.88849 5.97178 6.09651 6.13217 6.24654 6.28469 6.33311 6.45917 6.47928 6.61533 6.64660 6.77047 6.88677 7.03300 7.16057 7.42973 7.79397 8.15421 8.81881 9.47132 10.96625 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.010651 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.942590 B = 2628.238507 C = 3098.742634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.090 4.090 5 H 0.083 0.917 6 C -0.107 4.107 7 C -0.065 4.065 8 S -0.349 6.349 9 C 0.110 3.890 10 H 0.065 0.935 11 C -0.510 4.510 12 H 0.063 0.937 13 C 0.076 3.924 14 N -0.844 5.844 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.099 4.099 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.078 -4.071 -2.833 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.109 4.109 5 H 0.102 0.898 6 C -0.146 4.146 7 C -0.214 4.214 8 S -0.119 6.119 9 C -0.015 4.015 10 H 0.083 0.917 11 C -0.552 4.552 12 H 0.081 0.919 13 C -0.133 4.133 14 N -0.479 5.479 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.013 -3.572 -3.509 10.310 hybrid contribution -0.526 -1.126 1.504 1.951 sum -9.539 -4.697 -2.005 10.820 Atomic orbital electron populations 1.21782 0.96606 1.00955 1.01462 1.21616 0.94977 0.97857 1.02023 1.21670 0.96255 0.95829 1.01236 1.21114 0.93253 0.97955 0.98536 0.89833 1.21746 0.94950 0.99819 0.98041 1.23020 0.96502 0.98887 1.02980 1.86555 1.57016 1.20550 1.47806 1.20687 0.90350 0.98153 0.92300 0.91678 1.21148 0.94359 1.30556 1.09185 0.91887 1.24976 0.96399 0.95246 0.96676 1.69986 1.01903 1.36678 1.39300 0.86657 0.78005 0.81204 0.82480 1.20402 1.21100 1.19852 1.21705 0.97470 0.95092 0.99587 0.93007 0.93065 0.93298 0.91916 0.92164 0.92393 0.92740 0.92593 0.92288 0.90833 0.90922 0.92657 0.92645 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.13 -1.66 5.68 -26.73 -0.15 -1.81 16 3 C -0.11 -1.66 4.65 -26.73 -0.12 -1.79 16 4 C -0.09 -1.64 1.81 -91.05 -0.17 -1.80 16 5 H 0.08 1.71 6.02 -51.93 -0.31 1.40 16 6 C -0.11 -1.87 4.99 -26.89 -0.13 -2.01 16 7 C -0.07 -1.34 6.25 37.21 0.23 -1.10 16 8 S -0.35 -8.61 21.03 -107.50 -2.26 -10.87 16 9 C 0.11 2.73 2.66 -27.83 -0.07 2.65 16 10 H 0.07 1.80 8.12 -51.93 -0.42 1.38 16 11 C -0.51 -13.45 7.54 -34.44 -0.26 -13.71 16 12 H 0.06 1.63 6.37 -52.48 -0.33 1.29 16 13 C 0.08 2.07 5.27 -17.82 -0.09 1.98 16 14 N -0.84 -24.16 12.75 55.43 0.71 -23.45 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.10 -2.02 4.59 -26.90 -0.12 -2.15 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.80 6.29 -51.93 -0.33 0.48 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.86 6.02 -51.93 -0.31 0.55 16 28 H 0.06 1.03 8.06 -51.93 -0.42 0.61 16 29 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 1.10 8.05 -51.93 -0.42 0.68 16 33 H 0.05 0.89 8.06 -51.93 -0.42 0.48 16 LS Contribution 268.38 15.07 4.04 4.04 Total: -1.00 -27.92 268.38 -8.53 -36.46 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.48 Total: -1.01 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -0.53 Total: -21.02 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.71 Total: -23.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -2.26 Total: -10.87 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.92 -8.53 -36.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.833 kcal (2) G-P(sol) polarization free energy of solvation -27.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds