Wall clock time and date at job start Mon Mar 30 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47081 * 2 1 4 4 C 1.53001 * 109.47081 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.22149 * 304.40035 * 4 3 2 6 6 C 1.52584 * 109.22383 * 63.76191 * 4 3 2 7 7 C 1.53102 * 109.95284 * 190.99538 * 6 4 3 8 8 S 1.82095 * 108.89158 * 296.98739 * 7 6 4 9 9 C 1.81743 * 102.08688 * 53.20255 * 8 7 6 10 10 H 1.09003 * 109.57359 * 186.89607 * 9 8 7 11 11 C 1.50699 * 109.57897 * 66.64591 * 9 8 7 12 12 H 1.08004 * 120.00319 * 245.47361 * 11 9 8 13 13 C 1.37875 * 120.00141 * 65.46326 * 11 9 8 14 14 N 1.31515 * 120.00292 * 5.50994 * 13 11 9 15 15 Si 1.86806 * 120.00152 * 185.22948 * 13 11 9 16 16 H 1.48496 * 109.46999 * 85.00043 * 15 13 11 17 17 H 1.48507 * 109.47020 * 205.00213 * 15 13 11 18 18 H 1.48498 * 109.46816 * 325.00101 * 15 13 11 19 19 C 1.52576 * 109.22326 * 184.99618 * 4 3 2 20 20 H 1.09005 * 109.47286 * 300.00329 * 1 2 3 21 21 H 1.08998 * 109.47367 * 60.00338 * 1 2 3 22 22 H 1.09003 * 109.46851 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.46994 * 239.99475 * 2 1 3 24 24 H 1.09002 * 109.46895 * 119.99815 * 2 1 3 25 25 H 1.09005 * 109.47330 * 59.99697 * 3 2 1 26 26 H 1.08998 * 109.46744 * 300.00044 * 3 2 1 27 27 H 1.08999 * 109.38671 * 311.14097 * 6 4 3 28 28 H 1.09001 * 109.39137 * 70.84886 * 6 4 3 29 29 H 1.08999 * 109.57405 * 56.77954 * 7 6 4 30 30 H 1.08997 * 109.57143 * 177.03619 * 7 6 4 31 31 H 0.96998 * 120.00275 * 179.72523 * 14 13 11 32 32 H 1.09005 * 109.39095 * 48.85954 * 19 4 3 33 33 H 1.08992 * 109.39595 * 289.15122 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9285 0.8612 0.8501 6 6 4.0730 0.8054 -1.2914 7 6 5.5789 0.5467 -1.1946 8 16 6.4405 2.1408 -1.0150 9 6 5.5781 2.8820 0.4027 10 1 5.9208 3.9071 0.5433 11 6 5.8656 2.0787 1.6449 12 1 5.0676 1.5449 2.1395 13 6 7.1474 2.0252 2.1499 14 7 8.0970 2.7599 1.6132 15 14 7.5337 0.9149 3.6017 16 1 7.8217 -0.4573 3.1125 17 1 8.7187 1.4412 4.3258 18 1 6.3679 0.8783 4.5208 19 6 4.0723 2.8778 0.1261 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.5534 -0.1387 -1.4553 28 1 3.8740 1.4763 -2.1271 29 1 5.7868 -0.0798 -0.3273 30 1 5.9219 0.0441 -2.0989 31 1 8.9979 2.7252 1.9710 32 1 3.5524 3.3728 0.9464 33 1 3.8734 3.4133 -0.8021 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929824.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:11 Heat of formation + Delta-G solvation = -53.248114 kcal Electronic energy + Delta-G solvation = -12959.660819 eV Core-core repulsion = 10916.354429 eV Total energy + Delta-G solvation = -2043.306390 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.00278 -35.46368 -34.13083 -32.08499 -29.77665 -26.97828 -24.59951 -23.62609 -21.73801 -20.88612 -18.58320 -17.14487 -16.59748 -16.02663 -15.47706 -14.93394 -14.67200 -14.42634 -14.11269 -13.74912 -13.48069 -13.21013 -12.91119 -12.75391 -12.58609 -12.40613 -12.07511 -11.92656 -11.64998 -11.49975 -11.24610 -11.17403 -10.86371 -10.42848 -10.01630 -8.34461 -7.79769 -6.25047 1.37165 1.40851 1.49981 1.62244 2.37250 2.39827 3.35101 3.87049 3.98479 4.10100 4.28272 4.42311 4.52774 4.61447 4.65389 4.77617 4.88219 4.91349 4.97668 5.08331 5.11308 5.16080 5.23364 5.32382 5.38421 5.45871 5.49089 5.58503 5.64488 5.76938 6.13027 6.74630 7.37798 8.90066 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.010651 C = 0.009034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.942590 B = 2628.238507 C = 3098.742634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.085 4.085 5 H 0.060 0.940 6 C -0.100 4.100 7 C -0.051 4.051 8 S -0.401 6.401 9 C 0.111 3.889 10 H 0.024 0.976 11 C -0.518 4.518 12 H 0.067 0.933 13 C 0.027 3.973 14 N -0.883 5.883 15 Si 0.952 3.048 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.263 1.263 19 C -0.093 4.093 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.262 0.738 32 H 0.058 0.942 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -5.680 -3.060 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.104 4.104 5 H 0.078 0.922 6 C -0.138 4.138 7 C -0.200 4.200 8 S -0.172 6.172 9 C -0.014 4.014 10 H 0.042 0.958 11 C -0.559 4.559 12 H 0.085 0.915 13 C -0.179 4.179 14 N -0.519 5.519 15 Si 0.777 3.223 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.187 1.187 19 C -0.132 4.132 20 H 0.070 0.930 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.981 -5.185 -3.727 12.703 hybrid contribution 0.078 -0.611 1.523 1.643 sum -10.903 -5.796 -2.204 12.544 Atomic orbital electron populations 1.21749 0.94900 1.01949 1.01908 1.21592 0.96469 0.96259 1.01964 1.21585 0.93300 0.97479 1.01826 1.21023 0.95771 0.95575 0.97981 0.92186 1.21709 0.92755 1.01554 0.97801 1.23107 0.98183 0.95399 1.03275 1.86596 1.59167 1.24140 1.47318 1.20581 0.93029 0.95738 0.92052 0.95781 1.21413 0.94464 1.30393 1.09648 0.91521 1.25754 0.96397 0.96482 0.99225 1.70129 1.02165 1.38480 1.41120 0.85671 0.77971 0.79158 0.79517 1.20232 1.21025 1.18714 1.21633 0.94295 0.97304 0.99992 0.92950 0.92287 0.92086 0.91293 0.92917 0.92467 0.91540 0.89263 0.91632 0.92352 0.88689 0.92897 0.92343 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.13 -2.84 5.68 30.60 0.17 -2.67 16 3 C -0.10 -2.78 4.65 30.60 0.14 -2.64 16 4 C -0.08 -2.93 1.81 -11.07 -0.02 -2.95 16 5 H 0.06 2.37 6.02 -2.39 -0.01 2.36 16 6 C -0.10 -3.21 4.99 30.49 0.15 -3.06 16 7 C -0.05 -2.02 6.25 72.02 0.45 -1.57 16 8 S -0.40 -19.98 21.03 -56.49 -1.19 -21.17 16 9 C 0.11 5.64 2.66 29.88 0.08 5.72 16 10 H 0.02 1.40 8.12 -2.39 -0.02 1.38 16 11 C -0.52 -27.60 7.54 25.60 0.19 -27.41 16 12 H 0.07 3.44 6.37 -2.91 -0.02 3.42 16 13 C 0.03 1.49 5.27 84.65 0.45 1.93 16 14 N -0.88 -51.92 12.75 21.45 0.27 -51.64 16 15 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 19 C -0.09 -3.75 4.59 30.49 0.14 -3.61 16 20 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.47 6.29 -2.39 -0.02 1.46 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.54 8.09 -2.38 -0.02 1.52 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 2.36 6.02 -2.39 -0.01 2.34 16 28 H 0.06 2.08 8.06 -2.39 -0.02 2.06 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.06 2.29 8.05 -2.38 -0.02 2.27 16 33 H 0.05 2.04 8.06 -2.39 -0.02 2.02 16 Total: -1.00 -60.67 268.38 4.64 -56.03 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.06 Total: 9.92 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 2.47 Total: -38.25 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.27 Total: -51.64 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -19.98 SS G_CDS: -1.19 Total: -21.17 kcal Total: -60.67 4.64 -56.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929824.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.785 kcal (2) G-P(sol) polarization free energy of solvation -60.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds