Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.22131 * 55.00562 * 4 3 2 6 6 C 1.52581 * 109.22937 * 295.60094 * 4 3 2 7 7 C 1.53113 * 109.94773 * 168.96160 * 6 4 3 8 8 S 1.81748 * 108.80802 * 63.08704 * 7 6 4 9 9 C 1.81745 * 102.22064 * 306.71338 * 8 7 6 10 10 H 1.08996 * 109.57798 * 173.07281 * 9 8 7 11 11 C 1.50707 * 109.57522 * 293.45911 * 9 8 7 12 12 H 1.07996 * 119.99637 * 119.35769 * 11 9 8 13 13 C 1.37874 * 119.99912 * 299.35607 * 11 9 8 14 14 N 1.31512 * 120.00021 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99882 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47425 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47036 * 119.99906 * 15 13 11 18 18 H 1.48502 * 109.47010 * 239.99692 * 15 13 11 19 19 C 1.52579 * 109.22405 * 174.40242 * 4 3 2 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 26 26 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 27 27 H 1.09001 * 109.38707 * 289.15291 * 6 4 3 28 28 H 1.09007 * 109.39166 * 48.85114 * 6 4 3 29 29 H 1.08998 * 109.60811 * 303.28010 * 7 6 4 30 30 H 1.09005 * 109.68141 * 182.93573 * 7 6 4 31 31 H 0.97000 * 120.00449 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.39485 * 311.14525 * 19 4 3 33 33 H 1.09001 * 109.38826 * 70.85163 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9285 0.8524 -0.8441 6 6 4.0730 0.8198 1.2983 7 6 5.5789 0.5593 1.2038 8 16 6.4375 2.1491 1.0084 9 6 5.5782 2.8778 -0.4177 10 1 5.9211 3.9016 -0.5668 11 6 5.8656 2.0615 -1.6515 12 1 5.0557 1.5881 -2.1865 13 6 7.1626 1.9192 -2.0972 14 7 8.1487 2.4962 -1.4460 15 14 7.5188 0.9081 -3.6269 16 1 6.2466 0.3699 -4.1720 17 1 8.1698 1.7677 -4.6480 18 1 8.4232 -0.2166 -3.2773 19 6 4.0723 2.8764 -0.1412 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.8740 1.5000 2.1265 28 1 3.5535 -0.1224 1.4730 29 1 5.7868 -0.0763 0.3430 30 1 5.9241 0.0671 2.1131 31 1 9.0611 2.3965 -1.7597 32 1 3.5524 3.3628 -0.9665 33 1 3.8734 3.4216 0.7815 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -38.261793 kcal Electronic energy + Delta-G solvation = -12976.325092 eV Core-core repulsion = 10933.668557 eV Total energy + Delta-G solvation = -2042.656535 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.52984 -33.84635 -32.53859 -30.31835 -28.33289 -25.19687 -23.10534 -22.08529 -20.39689 -19.29076 -16.59891 -15.32843 -14.94613 -14.62976 -14.04321 -13.25107 -13.13650 -12.91227 -12.54292 -12.21840 -11.88704 -11.77459 -11.33377 -11.26309 -10.98501 -10.69129 -10.59486 -10.38869 -10.23233 -10.02219 -9.66235 -9.38735 -9.24436 -8.46024 -8.07332 -6.32718 -5.60404 -4.10938 3.23970 3.34774 3.36950 3.47618 4.31306 4.38540 5.10463 5.17999 5.33048 5.42370 5.51273 5.71108 5.77405 5.90152 5.98272 6.11048 6.14210 6.26415 6.29424 6.34742 6.47315 6.48823 6.62603 6.65772 6.80166 6.89898 7.03405 7.18642 7.40736 7.81328 8.16341 8.82763 9.49139 10.99266 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030468 B = 0.010748 C = 0.009054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.768775 B = 2604.607216 C = 3091.722340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.112 4.112 4 C -0.090 4.090 5 H 0.084 0.916 6 C -0.106 4.106 7 C -0.069 4.069 8 S -0.331 6.331 9 C 0.107 3.893 10 H 0.060 0.940 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.073 3.927 14 N -0.836 5.836 15 Si 0.887 3.113 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.099 4.099 20 H 0.051 0.949 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.261 0.739 32 H 0.054 0.946 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -3.618 2.720 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.150 4.150 4 C -0.108 4.108 5 H 0.102 0.898 6 C -0.145 4.145 7 C -0.217 4.217 8 S -0.101 6.101 9 C -0.018 4.018 10 H 0.078 0.922 11 C -0.555 4.555 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.471 5.471 15 Si 0.715 3.285 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.139 4.139 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.017 -3.140 3.406 10.137 hybrid contribution -0.548 -1.087 -1.570 1.987 sum -9.565 -4.227 1.836 10.617 Atomic orbital electron populations 1.21781 0.96619 1.00951 1.01449 1.21614 0.94958 0.97860 1.02031 1.21672 0.96296 0.95824 1.01196 1.21106 0.93185 0.97986 0.98514 0.89800 1.21754 0.95048 0.99792 0.97940 1.23001 0.96483 0.99339 1.02924 1.86427 1.57011 1.20843 1.45834 1.20703 0.90470 0.97950 0.92654 0.92239 1.21174 0.92900 1.32144 1.09311 0.91900 1.24984 0.96382 0.95620 0.96664 1.70068 0.99496 1.40624 1.36912 0.86608 0.78475 0.80210 0.83206 1.19692 1.20919 1.20870 1.21708 0.97472 0.95137 0.99536 0.93018 0.93299 0.93069 0.92162 0.91922 0.92430 0.92757 0.92329 0.92693 0.90847 0.90958 0.92884 0.92748 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.30 16 2 C -0.13 -1.67 5.69 -26.73 -0.15 -1.83 16 3 C -0.11 -1.67 4.65 -26.73 -0.12 -1.80 16 4 C -0.09 -1.64 1.81 -91.05 -0.16 -1.80 16 5 H 0.08 1.74 6.11 -51.93 -0.32 1.42 16 6 C -0.11 -1.88 4.99 -26.89 -0.13 -2.02 16 7 C -0.07 -1.42 6.24 37.22 0.23 -1.19 16 8 S -0.33 -8.20 20.43 -107.50 -2.20 -10.40 16 9 C 0.11 2.67 2.78 -27.83 -0.08 2.59 16 10 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 11 C -0.51 -13.56 7.50 -34.44 -0.26 -13.82 16 12 H 0.06 1.63 6.56 -52.49 -0.34 1.29 16 13 C 0.07 1.98 5.28 -17.82 -0.09 1.89 16 14 N -0.84 -23.93 12.23 55.43 0.68 -23.25 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.10 -2.03 4.58 -26.89 -0.12 -2.15 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.81 6.31 -51.93 -0.33 0.48 16 25 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 28 H 0.05 0.85 6.05 -51.93 -0.31 0.54 16 29 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 33 H 0.05 0.89 8.05 -51.93 -0.42 0.48 16 LS Contribution 267.66 15.07 4.03 4.03 Total: -1.00 -27.97 267.66 -8.53 -36.49 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -5.49 Total: -1.30 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -0.53 Total: -21.43 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.68 Total: -23.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -2.20 Total: -10.40 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.97 -8.53 -36.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.770 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds