Wall clock time and date at job start Mon Mar 30 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.22131 * 55.00562 * 4 3 2 6 6 C 1.52581 * 109.22937 * 295.60094 * 4 3 2 7 7 C 1.53113 * 109.94773 * 168.96160 * 6 4 3 8 8 S 1.81748 * 108.80802 * 63.08704 * 7 6 4 9 9 C 1.81745 * 102.22064 * 306.71338 * 8 7 6 10 10 H 1.08996 * 109.57798 * 173.07281 * 9 8 7 11 11 C 1.50707 * 109.57522 * 293.45911 * 9 8 7 12 12 H 1.07996 * 119.99637 * 119.35769 * 11 9 8 13 13 C 1.37874 * 119.99912 * 299.35607 * 11 9 8 14 14 N 1.31512 * 120.00021 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99882 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47425 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.47036 * 119.99906 * 15 13 11 18 18 H 1.48502 * 109.47010 * 239.99692 * 15 13 11 19 19 C 1.52579 * 109.22405 * 174.40242 * 4 3 2 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 26 26 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 27 27 H 1.09001 * 109.38707 * 289.15291 * 6 4 3 28 28 H 1.09007 * 109.39166 * 48.85114 * 6 4 3 29 29 H 1.08998 * 109.60811 * 303.28010 * 7 6 4 30 30 H 1.09005 * 109.68141 * 182.93573 * 7 6 4 31 31 H 0.97000 * 120.00449 * 180.02562 * 14 13 11 32 32 H 1.08999 * 109.39485 * 311.14525 * 19 4 3 33 33 H 1.09001 * 109.38826 * 70.85163 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9285 0.8524 -0.8441 6 6 4.0730 0.8198 1.2983 7 6 5.5789 0.5593 1.2038 8 16 6.4375 2.1491 1.0084 9 6 5.5782 2.8778 -0.4177 10 1 5.9211 3.9016 -0.5668 11 6 5.8656 2.0615 -1.6515 12 1 5.0557 1.5881 -2.1865 13 6 7.1626 1.9192 -2.0972 14 7 8.1487 2.4962 -1.4460 15 14 7.5188 0.9081 -3.6269 16 1 6.2466 0.3699 -4.1720 17 1 8.1698 1.7677 -4.6480 18 1 8.4232 -0.2166 -3.2773 19 6 4.0723 2.8764 -0.1412 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.8740 1.5000 2.1265 28 1 3.5535 -0.1224 1.4730 29 1 5.7868 -0.0763 0.3430 30 1 5.9241 0.0671 2.1131 31 1 9.0611 2.3965 -1.7597 32 1 3.5524 3.3628 -0.9665 33 1 3.8734 3.4216 0.7815 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929828.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:13 Heat of formation + Delta-G solvation = -52.207895 kcal Electronic energy + Delta-G solvation = -12976.929840 eV Core-core repulsion = 10933.668557 eV Total energy + Delta-G solvation = -2043.261283 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.99304 -35.45695 -34.12495 -32.08592 -29.77159 -26.96156 -24.59457 -23.61890 -21.73905 -20.86610 -18.59884 -17.10735 -16.59627 -16.02664 -15.47754 -14.92858 -14.65638 -14.44326 -14.10059 -13.74286 -13.47155 -13.20152 -12.88803 -12.77650 -12.57804 -12.36735 -12.07722 -11.91876 -11.62991 -11.50074 -11.24575 -11.13960 -10.88786 -10.45219 -9.96553 -8.37388 -7.61570 -6.24270 1.36334 1.41280 1.51516 1.64748 2.39283 2.42383 3.34826 3.87349 3.98905 4.10539 4.28405 4.43205 4.52832 4.61713 4.65581 4.78087 4.88452 4.91579 4.98169 5.08245 5.11203 5.16899 5.23162 5.32135 5.37923 5.45892 5.49177 5.58930 5.65774 5.77502 6.13550 6.74804 7.39262 8.92254 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.030468 B = 0.010748 C = 0.009054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.768775 B = 2604.607216 C = 3091.722340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.084 4.084 5 H 0.059 0.941 6 C -0.099 4.099 7 C -0.055 4.055 8 S -0.382 6.382 9 C 0.107 3.893 10 H 0.021 0.979 11 C -0.520 4.520 12 H 0.065 0.935 13 C 0.024 3.976 14 N -0.874 5.874 15 Si 0.951 3.049 16 H -0.263 1.263 17 H -0.280 1.280 18 H -0.284 1.284 19 C -0.093 4.093 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -5.040 2.910 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.103 4.103 5 H 0.077 0.923 6 C -0.138 4.138 7 C -0.204 4.204 8 S -0.154 6.154 9 C -0.018 4.018 10 H 0.039 0.961 11 C -0.562 4.562 12 H 0.083 0.917 13 C -0.182 4.182 14 N -0.510 5.510 15 Si 0.776 3.224 16 H -0.187 1.187 17 H -0.206 1.206 18 H -0.210 1.210 19 C -0.132 4.132 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.001 -4.565 3.586 12.439 hybrid contribution 0.068 -0.630 -1.584 1.706 sum -10.934 -5.195 2.002 12.270 Atomic orbital electron populations 1.21747 0.94859 1.01948 1.01927 1.21590 0.96496 0.96295 1.01909 1.21587 0.93306 0.97445 1.01839 1.21012 0.95733 0.95663 0.97876 0.92308 1.21711 0.92784 1.01516 0.97762 1.23073 0.98259 0.95926 1.03094 1.86463 1.59199 1.24262 1.45436 1.20618 0.93190 0.95641 0.92331 0.96081 1.21419 0.92966 1.31984 1.09803 0.91709 1.25746 0.96343 0.96704 0.99381 1.70214 0.99724 1.42339 1.38706 0.85614 0.78417 0.78569 0.79758 1.18681 1.20622 1.20982 1.21635 0.94290 0.97261 1.00024 0.92932 0.92102 0.92250 0.93004 0.91346 0.92451 0.91489 0.91601 0.89444 0.92554 0.88825 0.93089 0.92329 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.91 71.98 0.71 -2.03 16 2 C -0.13 -2.89 5.69 30.60 0.17 -2.71 16 3 C -0.10 -2.80 4.65 30.60 0.14 -2.66 16 4 C -0.08 -2.93 1.81 -11.07 -0.02 -2.95 16 5 H 0.06 2.36 6.11 -2.38 -0.01 2.35 16 6 C -0.10 -3.24 4.99 30.49 0.15 -3.09 16 7 C -0.06 -2.20 6.24 72.02 0.45 -1.75 16 8 S -0.38 -19.16 20.43 -56.49 -1.15 -20.32 16 9 C 0.11 5.46 2.78 29.89 0.08 5.55 16 10 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 11 C -0.52 -27.80 7.50 25.60 0.19 -27.61 16 12 H 0.06 3.37 6.56 -2.91 -0.02 3.35 16 13 C 0.02 1.32 5.28 84.65 0.45 1.77 16 14 N -0.87 -51.26 12.23 21.45 0.26 -51.00 16 15 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 C -0.09 -3.74 4.58 30.49 0.14 -3.60 16 20 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 21 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 1.49 6.31 -2.39 -0.02 1.48 16 25 H 0.06 1.55 8.07 -2.39 -0.02 1.53 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 28 H 0.09 2.36 6.05 -2.38 -0.01 2.35 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 31 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 32 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 33 H 0.05 2.06 8.05 -2.39 -0.02 2.04 16 Total: -1.00 -60.59 267.66 4.66 -55.92 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.05 Total: 9.29 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 2.47 Total: -39.09 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: 0.26 Total: -51.00 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -19.16 SS G_CDS: -1.15 Total: -20.32 kcal Total: -60.59 4.66 -55.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929828.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.714 kcal (2) G-P(sol) polarization free energy of solvation -60.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds