Wall clock time and date at job start Mon Mar 30 2020 02:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47747 * 2 1 4 4 C 1.52999 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.18138 * 305.61255 * 4 3 2 6 6 C 1.52575 * 109.22868 * 64.99460 * 4 3 2 7 7 C 1.53098 * 109.95645 * 190.99823 * 6 4 3 8 8 S 1.81750 * 108.94655 * 296.91281 * 7 6 4 9 9 C 1.82094 * 102.08448 * 53.22466 * 8 7 6 10 10 H 1.08999 * 109.64457 * 66.68222 * 9 8 7 11 11 C 1.50706 * 109.55744 * 186.96717 * 9 8 7 12 12 H 1.07996 * 119.99568 * 119.41207 * 11 9 8 13 13 C 1.37871 * 119.99996 * 299.41584 * 11 9 8 14 14 N 1.31517 * 120.00404 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99927 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47377 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47425 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.47464 * 239.99772 * 15 13 11 19 19 C 1.52580 * 109.22381 * 186.23591 * 4 3 2 20 20 H 1.08997 * 109.46919 * 300.00578 * 1 2 3 21 21 H 1.09004 * 109.46978 * 60.00033 * 1 2 3 22 22 H 1.08992 * 109.47362 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47469 * 239.99441 * 2 1 3 24 24 H 1.09004 * 109.46978 * 119.99967 * 2 1 3 25 25 H 1.08997 * 109.46986 * 59.99341 * 3 2 1 26 26 H 1.09004 * 109.46855 * 300.00042 * 3 2 1 27 27 H 1.09000 * 109.38811 * 70.85129 * 6 4 3 28 28 H 1.08996 * 109.39110 * 311.14688 * 6 4 3 29 29 H 1.09002 * 109.57593 * 56.78475 * 7 6 4 30 30 H 1.09001 * 109.57569 * 177.04379 * 7 6 4 31 31 H 0.96998 * 120.00242 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.39045 * 289.14297 * 19 4 3 33 33 H 1.08997 * 109.39314 * 48.95153 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9286 0.8427 0.8361 6 6 4.0720 0.8336 -1.3065 7 6 5.5779 0.5728 -1.2167 8 16 6.4399 2.1589 -1.0056 9 6 5.5786 2.8726 0.4312 10 1 5.7870 2.2740 1.3179 11 6 6.0532 4.2857 0.6531 12 1 5.3514 5.1051 0.6030 13 6 7.3831 4.5324 0.9200 14 7 8.2376 3.5345 0.9814 15 14 7.9712 6.2838 1.1957 16 1 6.8221 7.2167 1.0746 17 1 8.5624 6.3997 2.5531 18 1 8.9967 6.6277 0.1782 19 6 4.0726 2.8745 0.1559 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 3.8724 1.5226 -2.1272 28 1 3.5523 -0.1066 -1.4908 29 1 5.7865 -0.0726 -0.3634 30 1 5.9203 0.0901 -2.1321 31 1 9.1733 3.7081 1.1695 32 1 3.8730 3.4302 -0.7603 33 1 3.5546 3.3509 0.9882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107929831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:15 Heat of formation + Delta-G solvation = -42.286795 kcal Electronic energy + Delta-G solvation = -12692.559026 eV Core-core repulsion = 10649.727955 eV Total energy + Delta-G solvation = -2042.831072 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.54155 -33.83839 -32.85965 -30.34756 -28.46772 -25.28603 -23.24095 -21.94543 -20.41050 -19.52466 -16.64932 -15.38758 -14.98225 -14.66495 -14.07017 -13.54840 -13.22381 -12.92418 -12.60033 -12.37184 -12.08559 -11.80033 -11.47483 -11.04583 -10.99912 -10.95637 -10.63776 -10.40921 -10.35838 -10.05208 -9.78378 -9.54679 -9.08438 -8.52401 -8.16776 -6.26425 -5.82423 -4.18136 3.17169 3.33341 3.36982 3.40850 4.29154 4.39256 4.99728 5.08139 5.22939 5.33962 5.38859 5.60696 5.65839 5.80389 5.88972 6.00578 6.05576 6.11657 6.17381 6.23432 6.39327 6.39517 6.52457 6.59705 6.63953 6.80227 6.92172 7.03460 7.46785 7.75677 8.11299 8.77073 9.39357 10.90109 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046606 B = 0.008123 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.636409 B = 3446.045828 C = 3881.258443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.111 4.111 4 C -0.094 4.094 5 H 0.062 0.938 6 C -0.107 4.107 7 C -0.104 4.104 8 S -0.307 6.307 9 C 0.115 3.885 10 H 0.038 0.962 11 C -0.498 4.498 12 H 0.068 0.932 13 C 0.069 3.931 14 N -0.839 5.839 15 Si 0.897 3.103 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.103 4.103 20 H 0.051 0.949 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.264 0.736 32 H 0.059 0.941 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.173 -5.180 -1.663 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.113 4.113 5 H 0.080 0.920 6 C -0.146 4.146 7 C -0.252 4.252 8 S -0.076 6.076 9 C -0.010 4.010 10 H 0.056 0.944 11 C -0.541 4.541 12 H 0.086 0.914 13 C -0.141 4.141 14 N -0.473 5.473 15 Si 0.724 3.276 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.142 4.142 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.121 -4.897 -2.275 10.599 hybrid contribution -0.438 0.296 0.814 0.970 sum -9.559 -4.601 -1.462 10.709 Atomic orbital electron populations 1.21777 0.96443 1.01037 1.01592 1.21619 0.95173 0.97732 1.01936 1.21649 0.95642 0.95946 1.01667 1.21175 0.94240 0.98238 0.97627 0.91954 1.21744 0.94941 0.99937 0.97975 1.23289 0.97437 1.01543 1.02916 1.87636 1.54308 1.18173 1.47506 1.20766 0.90255 0.98336 0.91631 0.94352 1.20944 0.94136 0.91264 1.47766 0.91353 1.25163 0.96947 0.97558 0.94449 1.70082 1.03317 1.30606 1.43344 0.86447 0.79001 0.84309 0.77879 1.19440 1.20755 1.20676 1.21825 0.97368 0.93900 1.01115 0.92952 0.92945 0.93234 0.91883 0.92305 0.92223 0.92290 0.91736 0.92728 0.92002 0.90578 0.92569 0.92232 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.20 16 2 C -0.13 -1.55 5.70 -26.73 -0.15 -1.70 16 3 C -0.11 -1.57 4.65 -26.73 -0.12 -1.70 16 4 C -0.09 -1.63 1.92 -91.05 -0.18 -1.81 16 5 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 6 C -0.11 -1.82 5.00 -26.90 -0.13 -1.96 16 7 C -0.10 -2.04 6.45 37.21 0.24 -1.80 16 8 S -0.31 -7.70 20.41 -107.50 -2.19 -9.90 16 9 C 0.11 2.91 2.44 -27.83 -0.07 2.84 16 10 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 11 C -0.50 -13.61 8.57 -34.44 -0.30 -13.90 16 12 H 0.07 1.82 7.75 -52.49 -0.41 1.42 16 13 C 0.07 1.89 5.28 -17.82 -0.09 1.80 16 14 N -0.84 -24.19 12.22 55.43 0.68 -23.51 16 15 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 C -0.10 -2.12 4.28 -26.90 -0.12 -2.24 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.76 6.33 -51.93 -0.33 0.43 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 28 H 0.05 0.80 6.08 -51.93 -0.32 0.49 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 32 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 33 H 0.06 1.14 8.03 -51.93 -0.42 0.72 16 LS Contribution 271.58 15.07 4.09 4.09 Total: -1.00 -28.52 271.58 -8.65 -37.17 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.66 Total: -2.19 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.55 Total: -21.66 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.68 Total: -23.51 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -7.70 SS G_CDS: -2.19 Total: -9.90 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.52 -8.65 -37.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.113 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds