Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47747 * 2 1 4 4 C 1.52999 * 109.47490 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.18138 * 305.61255 * 4 3 2 6 6 C 1.52575 * 109.22868 * 64.99460 * 4 3 2 7 7 C 1.53098 * 109.95645 * 190.99823 * 6 4 3 8 8 S 1.81750 * 108.94655 * 296.91281 * 7 6 4 9 9 C 1.82094 * 102.08448 * 53.22466 * 8 7 6 10 10 H 1.08999 * 109.64457 * 66.68222 * 9 8 7 11 11 C 1.50706 * 109.55744 * 186.96717 * 9 8 7 12 12 H 1.07996 * 119.99568 * 119.41207 * 11 9 8 13 13 C 1.37871 * 119.99996 * 299.41584 * 11 9 8 14 14 N 1.31517 * 120.00404 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99927 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47377 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47425 * 119.99666 * 15 13 11 18 18 H 1.48504 * 109.47464 * 239.99772 * 15 13 11 19 19 C 1.52580 * 109.22381 * 186.23591 * 4 3 2 20 20 H 1.08997 * 109.46919 * 300.00578 * 1 2 3 21 21 H 1.09004 * 109.46978 * 60.00033 * 1 2 3 22 22 H 1.08992 * 109.47362 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47469 * 239.99441 * 2 1 3 24 24 H 1.09004 * 109.46978 * 119.99967 * 2 1 3 25 25 H 1.08997 * 109.46986 * 59.99341 * 3 2 1 26 26 H 1.09004 * 109.46855 * 300.00042 * 3 2 1 27 27 H 1.09000 * 109.38811 * 70.85129 * 6 4 3 28 28 H 1.08996 * 109.39110 * 311.14688 * 6 4 3 29 29 H 1.09002 * 109.57593 * 56.78475 * 7 6 4 30 30 H 1.09001 * 109.57569 * 177.04379 * 7 6 4 31 31 H 0.96998 * 120.00242 * 180.02562 * 14 13 11 32 32 H 1.08996 * 109.39045 * 289.14297 * 19 4 3 33 33 H 1.08997 * 109.39314 * 48.95153 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9286 0.8427 0.8361 6 6 4.0720 0.8336 -1.3065 7 6 5.5779 0.5728 -1.2167 8 16 6.4399 2.1589 -1.0056 9 6 5.5786 2.8726 0.4312 10 1 5.7870 2.2740 1.3179 11 6 6.0532 4.2857 0.6531 12 1 5.3514 5.1051 0.6030 13 6 7.3831 4.5324 0.9200 14 7 8.2376 3.5345 0.9814 15 14 7.9712 6.2838 1.1957 16 1 6.8221 7.2167 1.0746 17 1 8.5624 6.3997 2.5531 18 1 8.9967 6.6277 0.1782 19 6 4.0726 2.8745 0.1559 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6768 1.9563 -0.8900 27 1 3.8724 1.5226 -2.1272 28 1 3.5523 -0.1066 -1.4908 29 1 5.7865 -0.0726 -0.3634 30 1 5.9203 0.0901 -2.1321 31 1 9.1733 3.7081 1.1695 32 1 3.8730 3.4302 -0.7603 33 1 3.5546 3.3509 0.9882 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107929831.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -56.781165 kcal Electronic energy + Delta-G solvation = -12693.187550 eV Core-core repulsion = 10649.727955 eV Total energy + Delta-G solvation = -2043.459595 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 214.109 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.93959 -35.54790 -34.31170 -32.13200 -29.87398 -27.00356 -24.69738 -23.44472 -21.80528 -20.98334 -18.66281 -17.18912 -16.60506 -16.04444 -15.45209 -15.14720 -14.65781 -14.41899 -14.14875 -14.01363 -13.72395 -13.04390 -12.82471 -12.75413 -12.66316 -12.34448 -12.06780 -11.96150 -11.67908 -11.53943 -11.38517 -11.15772 -10.90014 -10.50499 -10.05114 -8.32931 -7.85026 -6.34183 1.31577 1.40677 1.53166 1.58602 2.34807 2.47979 3.25442 3.77869 3.91805 4.03035 4.24367 4.36330 4.46214 4.53008 4.59731 4.75377 4.80817 4.87210 4.90693 5.01364 5.07207 5.11231 5.23506 5.27842 5.32782 5.39282 5.44071 5.55654 5.59036 5.69842 6.06206 6.66305 7.28007 8.82301 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.046606 B = 0.008123 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.636409 B = 3446.045828 C = 3881.258443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.089 4.089 5 H 0.051 0.949 6 C -0.100 4.100 7 C -0.085 4.085 8 S -0.373 6.373 9 C 0.120 3.880 10 H 0.003 0.997 11 C -0.523 4.523 12 H 0.068 0.932 13 C 0.020 3.980 14 N -0.875 5.875 15 Si 0.964 3.036 16 H -0.261 1.261 17 H -0.274 1.274 18 H -0.282 1.282 19 C -0.094 4.094 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 -5.635 -2.191 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.142 4.142 4 C -0.108 4.108 5 H 0.069 0.931 6 C -0.139 4.139 7 C -0.234 4.234 8 S -0.143 6.143 9 C -0.005 4.005 10 H 0.021 0.979 11 C -0.565 4.565 12 H 0.086 0.914 13 C -0.186 4.186 14 N -0.511 5.511 15 Si 0.788 3.212 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.208 1.208 19 C -0.133 4.133 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.836 -5.340 -2.793 12.399 hybrid contribution 0.079 0.342 0.960 1.022 sum -10.758 -4.998 -1.833 12.003 Atomic orbital electron populations 1.21752 0.94916 1.02024 1.01930 1.21590 0.96500 0.95987 1.02104 1.21575 0.92745 0.97738 1.02092 1.21107 0.96698 0.95500 0.97494 0.93057 1.21703 0.92954 1.01646 0.97585 1.23338 0.98746 0.97480 1.03788 1.87606 1.56810 1.22677 1.47243 1.20638 0.93007 0.96848 0.90045 0.97866 1.21294 0.94589 0.92329 1.48295 0.91368 1.25970 0.97062 1.01538 0.94056 1.70215 1.03494 1.32717 1.44625 0.85415 0.78467 0.79502 0.77833 1.18495 1.19956 1.20769 1.21710 0.94238 0.96545 1.00839 0.92838 0.92452 0.91967 0.91329 0.92521 0.92125 0.91620 0.91854 0.89056 0.92103 0.88525 0.92647 0.92698 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.12 -2.62 5.70 30.59 0.17 -2.44 16 3 C -0.10 -2.66 4.65 30.59 0.14 -2.52 16 4 C -0.09 -2.96 1.92 -11.07 -0.02 -2.98 16 5 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 6 C -0.10 -3.16 5.00 30.49 0.15 -3.01 16 7 C -0.09 -3.24 6.45 72.01 0.46 -2.77 16 8 S -0.37 -18.98 20.41 -56.49 -1.15 -20.14 16 9 C 0.12 6.20 2.44 29.88 0.07 6.28 16 10 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 11 C -0.52 -29.20 8.57 25.60 0.22 -28.98 16 12 H 0.07 3.69 7.75 -2.91 -0.02 3.67 16 13 C 0.02 1.11 5.28 84.65 0.45 1.56 16 14 N -0.88 -51.83 12.22 21.45 0.26 -51.56 16 15 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 19 C -0.09 -3.87 4.28 30.49 0.13 -3.74 16 20 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 1.37 6.33 -2.38 -0.02 1.35 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.06 1.55 8.06 -2.39 -0.02 1.53 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 28 H 0.09 2.30 6.08 -2.39 -0.01 2.28 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.05 2.29 8.06 -2.39 -0.02 2.27 16 33 H 0.06 2.40 8.03 -2.39 -0.02 2.38 16 Total: -1.00 -62.45 271.58 4.68 -57.77 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: 1.05 Total: 8.68 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 2.50 Total: -40.48 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.26 Total: -51.56 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -18.98 SS G_CDS: -1.15 Total: -20.14 kcal Total: -62.45 4.68 -57.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107929831.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.992 kcal (2) G-P(sol) polarization free energy of solvation -62.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds