Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00159 * 2 1 4 4 O 1.21287 * 119.99464 * 0.27285 * 3 2 1 5 5 C 1.50691 * 120.00374 * 180.27839 * 3 2 1 6 6 H 1.08998 * 109.68151 * 23.97452 * 5 3 2 7 7 C 1.53307 * 109.67895 * 263.45957 * 5 3 2 8 8 O 1.42959 * 109.22010 * 187.97144 * 7 5 3 9 9 C 1.42963 * 114.16855 * 62.58644 * 8 7 5 10 10 C 1.53297 * 109.22048 * 297.41490 * 9 8 7 11 11 N 1.47153 * 109.68576 * 144.53453 * 5 3 2 12 12 C 1.36935 * 120.98094 * 350.23341 * 11 5 3 13 13 H 1.08000 * 120.00121 * 326.98180 * 12 11 5 14 14 C 1.38810 * 119.99919 * 146.97852 * 12 11 5 15 15 N 1.31620 * 120.00342 * 342.16048 * 14 12 11 16 16 Si 1.86799 * 119.99955 * 162.15662 * 14 12 11 17 17 H 1.48507 * 109.47238 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47290 * 120.00111 * 16 14 12 19 19 H 1.48495 * 109.47297 * 240.00358 * 16 14 12 20 20 H 1.09004 * 109.47484 * 299.72834 * 1 2 3 21 21 H 1.08995 * 109.47446 * 59.72888 * 1 2 3 22 22 H 1.08998 * 109.46823 * 179.72775 * 1 2 3 23 23 H 0.97002 * 120.00225 * 180.26830 * 2 1 3 24 24 H 1.08996 * 109.50901 * 307.89762 * 7 5 3 25 25 H 1.08997 * 109.51023 * 68.04828 * 7 5 3 26 26 H 1.08996 * 109.51210 * 57.33362 * 9 8 7 27 27 H 1.08997 * 109.51567 * 177.44001 * 9 8 7 28 28 H 1.08995 * 109.68264 * 172.02044 * 10 9 8 29 29 H 1.08997 * 109.68339 * 292.58139 * 10 9 8 30 30 H 0.96996 * 120.00097 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0050 5 6 3.6458 1.1673 -0.0063 6 1 4.0112 0.2305 -0.4272 7 6 4.1681 1.3282 1.4260 8 8 5.5852 1.5136 1.3922 9 6 6.0048 2.6953 0.7057 10 6 5.5766 2.6044 -0.7635 11 7 4.1381 2.2977 -0.8096 12 6 3.2829 3.0420 -1.5776 13 1 2.4253 2.5745 -2.0385 14 6 3.5182 4.3973 -1.7636 15 7 4.3269 5.0426 -0.9501 16 14 2.6871 5.3053 -3.1687 17 1 1.8326 4.3605 -3.9320 18 1 1.8467 6.4007 -2.6218 19 1 3.7206 5.8766 -4.0690 20 1 -0.3634 0.5096 0.8924 21 1 -0.3634 0.5180 -0.8875 22 1 -0.3633 -1.0277 -0.0049 23 1 1.9500 -0.8400 -0.0039 24 1 3.6984 2.1958 1.8894 25 1 3.9315 0.4339 2.0024 26 1 5.5417 3.5678 1.1665 27 1 7.0894 2.7850 0.7647 28 1 5.7650 3.5561 -1.2603 29 1 6.1368 1.8127 -1.2608 30 1 4.4910 5.9898 -1.0799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130572661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -45.112734 kcal Electronic energy + Delta-G solvation = -15324.372054 eV Core-core repulsion = 12735.125226 eV Total energy + Delta-G solvation = -2589.246828 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.32042 -37.57330 -34.42309 -33.76053 -31.48374 -30.21654 -27.25140 -26.18173 -23.40274 -23.17718 -20.35965 -19.39510 -17.43197 -16.15710 -15.62182 -15.30562 -14.74622 -14.57375 -14.17921 -13.74600 -13.40749 -13.22780 -12.55052 -12.18335 -11.98875 -11.78401 -11.15069 -10.93924 -10.74984 -10.56211 -10.16802 -9.99003 -9.58524 -9.18271 -8.84498 -8.56057 -8.22466 -6.55759 -5.74556 -3.20816 3.39262 3.43932 3.50145 3.53957 3.75566 4.52636 4.66004 5.31181 5.37661 5.45488 5.67841 5.76522 5.85775 5.89742 6.04725 6.11344 6.40433 6.48423 6.49471 6.61388 6.91432 7.13776 7.35205 7.87301 7.98991 8.04616 8.46035 9.03160 9.18649 9.78569 10.35428 11.33677 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.015979 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.520913 B = 1751.885633 C = 2738.785716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.751 5.751 3 C 0.509 3.491 4 O -0.489 6.489 5 C 0.118 3.882 6 H 0.051 0.949 7 C 0.062 3.938 8 O -0.396 6.396 9 C 0.047 3.953 10 C 0.131 3.869 11 N -0.577 5.577 12 C -0.222 4.222 13 H 0.066 0.934 14 C 0.005 3.995 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.290 1.290 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.066 0.934 23 H 0.395 0.605 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.012 0.988 30 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.510 -9.656 2.496 10.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.407 5.407 3 C 0.294 3.706 4 O -0.359 6.359 5 C 0.008 3.992 6 H 0.068 0.932 7 C -0.017 4.017 8 O -0.314 6.314 9 C -0.031 4.031 10 C 0.006 3.994 11 N -0.303 5.303 12 C -0.352 4.352 13 H 0.083 0.917 14 C -0.193 4.193 15 N -0.546 5.546 16 Si 0.736 3.264 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.217 1.217 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.227 0.773 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.030 0.970 30 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.820 -8.780 2.566 9.326 hybrid contribution -0.493 0.342 -0.719 0.937 sum -2.313 -8.437 1.847 8.941 Atomic orbital electron populations 1.21370 0.80849 1.01058 1.01879 1.46014 1.06969 1.08902 1.78773 1.20709 0.90233 0.83207 0.76406 1.90746 1.69613 1.30742 1.44827 1.21286 0.89430 0.94829 0.93635 0.93156 1.22747 0.82714 1.00617 0.95608 1.87758 1.21202 1.45469 1.77009 1.23078 0.98040 0.86930 0.95006 1.21566 0.82769 1.01081 0.94005 1.44184 1.03287 1.33207 1.49651 1.19050 1.07010 0.89421 1.19707 0.91661 1.25069 0.99482 0.95991 0.98748 1.69970 1.40111 1.08366 1.36136 0.86162 0.78739 0.79586 0.81911 1.20374 1.21739 1.21696 0.92887 0.92758 0.91530 0.77272 0.92872 0.90383 0.91957 0.90561 0.87520 0.96966 0.93802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.70 59.85 0.64 1.89 16 2 N -0.75 -11.71 5.71 -67.08 -0.38 -12.09 16 3 C 0.51 10.83 6.14 -10.99 -0.07 10.76 16 4 O -0.49 -12.80 14.38 5.55 0.08 -12.72 16 5 C 0.12 2.55 3.47 -68.57 -0.24 2.31 16 6 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 7 C 0.06 1.26 6.27 37.32 0.23 1.50 16 8 O -0.40 -8.39 10.74 -35.23 -0.38 -8.77 16 9 C 0.05 1.03 6.99 37.31 0.26 1.29 16 10 C 0.13 3.15 5.99 -3.53 -0.02 3.13 16 11 N -0.58 -14.92 3.00 -165.61 -0.50 -15.42 16 12 C -0.22 -6.36 7.32 -15.06 -0.11 -6.47 16 13 H 0.07 1.94 6.80 -52.49 -0.36 1.58 16 14 C 0.01 0.15 4.95 -17.43 -0.09 0.07 16 15 N -0.90 -26.38 11.31 55.49 0.63 -25.75 16 16 Si 0.91 22.89 29.59 -169.99 -5.03 17.86 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.39 4.75 8.80 -40.82 -0.36 4.39 16 24 H 0.05 1.21 8.13 -51.93 -0.42 0.78 16 25 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.11 2.82 5.70 -51.93 -0.30 2.53 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 250.72 15.07 3.78 3.78 Total: -1.00 -33.53 250.72 -5.14 -38.67 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.95 Total: -0.04 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 0.61 Total: 14.48 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.25 Total: -53.26 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.30 Total: -21.48 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.53 -5.14 -38.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130572661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.442 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds