Wall clock time and date at job start Mon Mar 30 2020 02:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00159 * 2 1 4 4 O 1.21287 * 119.99464 * 0.27285 * 3 2 1 5 5 C 1.50691 * 120.00374 * 180.27839 * 3 2 1 6 6 H 1.08998 * 109.68151 * 23.97452 * 5 3 2 7 7 C 1.53307 * 109.67895 * 263.45957 * 5 3 2 8 8 O 1.42959 * 109.22010 * 187.97144 * 7 5 3 9 9 C 1.42963 * 114.16855 * 62.58644 * 8 7 5 10 10 C 1.53297 * 109.22048 * 297.41490 * 9 8 7 11 11 N 1.47153 * 109.68576 * 144.53453 * 5 3 2 12 12 C 1.36935 * 120.98094 * 350.23341 * 11 5 3 13 13 H 1.08000 * 120.00121 * 326.98180 * 12 11 5 14 14 C 1.38810 * 119.99919 * 146.97852 * 12 11 5 15 15 N 1.31620 * 120.00342 * 342.16048 * 14 12 11 16 16 Si 1.86799 * 119.99955 * 162.15662 * 14 12 11 17 17 H 1.48507 * 109.47238 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47290 * 120.00111 * 16 14 12 19 19 H 1.48495 * 109.47297 * 240.00358 * 16 14 12 20 20 H 1.09004 * 109.47484 * 299.72834 * 1 2 3 21 21 H 1.08995 * 109.47446 * 59.72888 * 1 2 3 22 22 H 1.08998 * 109.46823 * 179.72775 * 1 2 3 23 23 H 0.97002 * 120.00225 * 180.26830 * 2 1 3 24 24 H 1.08996 * 109.50901 * 307.89762 * 7 5 3 25 25 H 1.08997 * 109.51023 * 68.04828 * 7 5 3 26 26 H 1.08996 * 109.51210 * 57.33362 * 9 8 7 27 27 H 1.08997 * 109.51567 * 177.44001 * 9 8 7 28 28 H 1.08995 * 109.68264 * 172.02044 * 10 9 8 29 29 H 1.08997 * 109.68339 * 292.58139 * 10 9 8 30 30 H 0.96996 * 120.00097 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 0.0050 5 6 3.6458 1.1673 -0.0063 6 1 4.0112 0.2305 -0.4272 7 6 4.1681 1.3282 1.4260 8 8 5.5852 1.5136 1.3922 9 6 6.0048 2.6953 0.7057 10 6 5.5766 2.6044 -0.7635 11 7 4.1381 2.2977 -0.8096 12 6 3.2829 3.0420 -1.5776 13 1 2.4253 2.5745 -2.0385 14 6 3.5182 4.3973 -1.7636 15 7 4.3269 5.0426 -0.9501 16 14 2.6871 5.3053 -3.1687 17 1 1.8326 4.3605 -3.9320 18 1 1.8467 6.4007 -2.6218 19 1 3.7206 5.8766 -4.0690 20 1 -0.3634 0.5096 0.8924 21 1 -0.3634 0.5180 -0.8875 22 1 -0.3633 -1.0277 -0.0049 23 1 1.9500 -0.8400 -0.0039 24 1 3.6984 2.1958 1.8894 25 1 3.9315 0.4339 2.0024 26 1 5.5417 3.5678 1.1665 27 1 7.0894 2.7850 0.7647 28 1 5.7650 3.5561 -1.2603 29 1 6.1368 1.8127 -1.2608 30 1 4.4910 5.9898 -1.0799 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130572661.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:43 Heat of formation + Delta-G solvation = -72.218342 kcal Electronic energy + Delta-G solvation = -15325.547441 eV Core-core repulsion = 12735.125226 eV Total energy + Delta-G solvation = -2590.422216 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01119 -39.26686 -36.25413 -35.35818 -33.41127 -32.05784 -29.05947 -27.64963 -25.24325 -24.97655 -22.04266 -21.12094 -19.28084 -17.92055 -17.35004 -16.96752 -16.48915 -16.40046 -15.81469 -15.36123 -15.17466 -15.01345 -14.39937 -13.76308 -13.58460 -13.10823 -13.02526 -12.74890 -12.72973 -12.47346 -12.14089 -11.92201 -11.45128 -11.02364 -10.67086 -10.23402 -9.97270 -8.56855 -7.87270 -5.35567 1.40375 1.43266 1.52309 1.75621 2.35584 2.50146 2.98767 3.29426 3.54480 4.06442 4.16427 4.21359 4.48793 4.54571 4.58013 4.66133 4.67361 4.81257 4.94354 4.97194 5.32263 5.40703 5.57394 5.66538 6.25282 6.37452 6.71576 7.11205 7.48510 7.72994 8.26624 9.18267 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.023318 B = 0.015979 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.520913 B = 1751.885633 C = 2738.785716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.727 5.727 3 C 0.508 3.492 4 O -0.550 6.550 5 C 0.110 3.890 6 H 0.083 0.917 7 C 0.066 3.934 8 O -0.389 6.389 9 C 0.058 3.942 10 C 0.128 3.872 11 N -0.599 5.599 12 C -0.221 4.221 13 H 0.049 0.951 14 C -0.047 4.047 15 N -0.925 5.925 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.298 1.298 19 H -0.281 1.281 20 H 0.046 0.954 21 H 0.036 0.964 22 H 0.118 0.882 23 H 0.417 0.583 24 H 0.020 0.980 25 H 0.127 0.873 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.079 0.921 29 H 0.031 0.969 30 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.523 -11.974 2.603 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.382 5.382 3 C 0.294 3.706 4 O -0.425 6.425 5 C 0.001 3.999 6 H 0.100 0.900 7 C -0.013 4.013 8 O -0.308 6.308 9 C -0.020 4.020 10 C 0.004 3.996 11 N -0.325 5.325 12 C -0.351 4.351 13 H 0.066 0.934 14 C -0.242 4.242 15 N -0.571 5.571 16 Si 0.789 3.211 17 H -0.201 1.201 18 H -0.226 1.226 19 H -0.207 1.207 20 H 0.065 0.935 21 H 0.054 0.946 22 H 0.137 0.863 23 H 0.253 0.747 24 H 0.038 0.962 25 H 0.145 0.855 26 H 0.047 0.953 27 H 0.128 0.872 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.827 -11.187 2.675 11.647 hybrid contribution -0.535 0.902 -0.716 1.270 sum -2.362 -10.286 1.958 10.734 Atomic orbital electron populations 1.21588 0.79032 1.04086 1.00733 1.45768 1.08136 1.08143 1.76168 1.20730 0.90269 0.83852 0.75795 1.90726 1.70507 1.33196 1.48103 1.21531 0.90124 0.94238 0.94011 0.90005 1.22822 0.81922 1.01348 0.95160 1.87768 1.21659 1.44694 1.76649 1.22922 0.99661 0.86061 0.93321 1.21545 0.82517 1.00280 0.95300 1.44329 1.03710 1.33830 1.50629 1.19002 1.06413 0.89722 1.19979 0.93365 1.25701 1.00753 0.96801 1.00931 1.70090 1.41497 1.08198 1.37336 0.85331 0.77928 0.78182 0.79708 1.20110 1.22556 1.20683 0.93511 0.94551 0.86315 0.74685 0.96177 0.85509 0.95343 0.87206 0.90262 0.95067 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.15 10.70 127.77 1.37 3.52 16 2 N -0.73 -20.58 5.71 -484.53 -2.77 -23.35 16 3 C 0.51 21.03 6.14 87.65 0.54 21.57 16 4 O -0.55 -29.19 14.38 -3.05 -0.04 -29.23 16 5 C 0.11 4.56 3.47 44.22 0.15 4.72 16 6 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 7 C 0.07 2.56 6.27 72.09 0.45 3.01 16 8 O -0.39 -15.60 10.74 -148.98 -1.60 -17.20 16 9 C 0.06 2.49 6.99 72.08 0.50 2.99 16 10 C 0.13 6.13 5.99 86.35 0.52 6.65 16 11 N -0.60 -30.83 3.00 -677.87 -2.04 -32.86 16 12 C -0.22 -12.80 7.32 84.03 0.62 -12.19 16 13 H 0.05 2.92 6.80 -2.91 -0.02 2.90 16 14 C -0.05 -2.73 4.95 84.86 0.42 -2.31 16 15 N -0.92 -55.60 11.31 21.65 0.24 -55.35 16 16 Si 0.96 47.99 29.59 68.60 2.03 50.02 16 17 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 20 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.42 8.23 8.80 -92.71 -0.82 7.41 16 24 H 0.02 0.90 8.13 -2.39 -0.02 0.88 16 25 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 28 H 0.08 4.26 5.70 -2.39 -0.01 4.25 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -74.62 250.72 0.72 -73.90 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 0.33 Total: 6.12 kcal Atomic # 6 Polarization: 23.39 SS G_CDS: 4.57 Total: 27.96 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.56 Total: -111.56 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.64 Total: -46.43 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -74.62 0.72 -73.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130572661.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.686 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds