Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34781 * 119.99797 * 2 1 4 4 O 1.21279 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99372 * 179.72261 * 3 2 1 6 6 H 1.08991 * 109.68208 * 296.12732 * 5 3 2 7 7 C 1.53300 * 109.68564 * 56.65266 * 5 3 2 8 8 O 1.42957 * 109.22253 * 172.02476 * 7 5 3 9 9 C 1.42965 * 114.16345 * 297.41262 * 8 7 5 10 10 C 1.53297 * 109.22316 * 62.58824 * 9 8 7 11 11 N 1.47155 * 109.67662 * 175.61068 * 5 3 2 12 12 C 1.36939 * 120.98501 * 9.73113 * 11 5 3 13 13 H 1.07999 * 119.99270 * 305.03653 * 12 11 5 14 14 C 1.38800 * 120.00472 * 125.03684 * 12 11 5 15 15 N 1.31620 * 120.00146 * 183.84105 * 14 12 11 16 16 Si 1.86802 * 120.00127 * 3.84416 * 14 12 11 17 17 H 1.48498 * 109.47244 * 84.39834 * 16 14 12 18 18 H 1.48497 * 109.47175 * 204.39932 * 16 14 12 19 19 H 1.48503 * 109.46855 * 324.39465 * 16 14 12 20 20 H 1.08999 * 109.47030 * 300.00448 * 1 2 3 21 21 H 1.09002 * 109.46992 * 60.00181 * 1 2 3 22 22 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 23 23 H 0.96997 * 119.99972 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.50637 * 291.94676 * 7 5 3 25 25 H 1.09003 * 109.51079 * 52.09710 * 7 5 3 26 26 H 1.09008 * 109.51160 * 182.50780 * 9 8 7 27 27 H 1.08998 * 109.51506 * 302.66212 * 9 8 7 28 28 H 1.08992 * 109.68344 * 67.41548 * 10 9 8 29 29 H 1.08999 * 109.68390 * 187.97616 * 10 9 8 30 30 H 0.96999 * 120.00477 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0063 6 1 4.0091 0.7174 0.9303 7 6 4.1673 0.3707 -1.1953 8 8 5.5849 0.5308 -1.2868 9 6 6.0082 1.8767 -1.5175 10 6 5.5812 2.7503 -0.3324 11 7 4.1419 2.5484 -0.1010 12 6 3.2894 3.6143 0.0101 13 1 2.4226 3.6814 -0.6307 14 6 3.5391 4.6083 0.9461 15 7 2.6806 5.5931 1.1052 16 14 5.0938 4.5483 1.9800 17 1 6.2156 5.1597 1.2231 18 1 4.8788 5.3021 3.2413 19 1 5.4227 3.1355 2.2977 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9500 -0.8400 0.0004 24 1 3.9277 -0.6845 -1.0642 25 1 3.6995 0.7405 -2.1078 26 1 7.0933 1.9049 -1.6182 27 1 5.5471 2.2519 -2.4311 28 1 6.1398 2.4603 0.5575 29 1 5.7728 3.7986 -0.5612 30 1 2.8549 6.2876 1.7596 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130572857.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = -30.548000 kcal Electronic energy + Delta-G solvation = -15339.562904 eV Core-core repulsion = 12750.947650 eV Total energy + Delta-G solvation = -2588.615254 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47174 -37.79972 -34.65478 -33.65832 -31.56831 -30.96054 -27.54269 -25.96714 -23.86774 -22.97309 -20.76561 -19.47806 -17.60356 -16.01493 -15.82969 -15.63739 -15.18065 -14.46689 -14.26544 -14.00395 -13.86170 -13.38374 -12.48898 -12.34663 -11.96778 -11.92632 -11.48558 -11.39031 -10.86242 -10.72544 -10.38446 -9.95562 -9.75443 -9.52864 -8.71450 -8.51237 -7.98100 -6.41581 -5.71187 -3.43215 3.37220 3.46644 3.52026 3.53061 3.70916 4.24862 4.62830 4.89261 5.31448 5.39181 5.47894 5.58378 5.72855 5.80224 5.83687 5.89137 5.92339 6.12576 6.16865 6.32241 6.47460 6.67299 6.93535 7.56016 8.02016 8.29138 8.50299 9.04439 9.30560 9.82151 10.21003 11.35811 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.016059 C = 0.010799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.376629 B = 1743.104642 C = 2592.154752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.754 5.754 3 C 0.499 3.501 4 O -0.460 6.460 5 C 0.122 3.878 6 H 0.059 0.941 7 C 0.059 3.941 8 O -0.387 6.387 9 C 0.044 3.956 10 C 0.096 3.904 11 N -0.599 5.599 12 C -0.244 4.244 13 H 0.105 0.895 14 C 0.039 3.961 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.285 1.285 18 H -0.302 1.302 19 H -0.270 1.270 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.390 0.610 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.086 0.914 27 H 0.051 0.949 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -12.561 -3.395 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.411 5.411 3 C 0.284 3.716 4 O -0.328 6.328 5 C 0.012 3.988 6 H 0.077 0.923 7 C -0.020 4.020 8 O -0.306 6.306 9 C -0.034 4.034 10 C -0.029 4.029 11 N -0.327 5.327 12 C -0.372 4.372 13 H 0.122 0.878 14 C -0.162 4.162 15 N -0.547 5.547 16 Si 0.710 3.290 17 H -0.211 1.211 18 H -0.230 1.230 19 H -0.195 1.195 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.222 0.778 24 H 0.105 0.895 25 H 0.070 0.930 26 H 0.104 0.896 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.571 -11.678 -3.276 12.231 hybrid contribution 0.899 -0.135 0.794 1.207 sum 2.470 -11.813 -2.483 12.322 Atomic orbital electron populations 1.21356 0.80713 1.00947 1.02020 1.46178 1.07013 1.08696 1.79211 1.20755 0.90448 0.83389 0.77021 1.90959 1.69419 1.28782 1.43632 1.21088 0.90512 0.89822 0.97345 0.92345 1.22901 0.82235 0.99051 0.97850 1.87815 1.21594 1.27788 1.93377 1.23121 0.98869 0.82798 0.98578 1.22104 0.86121 0.99289 0.95378 1.44152 1.03136 1.00135 1.85269 1.19198 1.05652 0.96557 1.15832 0.87829 1.25843 0.96580 0.97847 0.95886 1.69789 1.34946 1.13683 1.36266 0.86925 0.84356 0.77667 0.80046 1.21142 1.22979 1.19537 0.92720 0.92805 0.91624 0.77759 0.89527 0.92991 0.89602 0.93034 0.94872 0.90237 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.70 59.85 0.64 1.89 16 2 N -0.75 -11.33 5.60 -67.07 -0.38 -11.71 16 3 C 0.50 10.40 7.17 -10.98 -0.08 10.33 16 4 O -0.46 -12.17 12.31 5.56 0.07 -12.10 16 5 C 0.12 2.51 3.50 -68.57 -0.24 2.27 16 6 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 7 C 0.06 0.98 6.07 37.31 0.23 1.21 16 8 O -0.39 -6.95 10.74 -35.23 -0.38 -7.33 16 9 C 0.04 0.79 6.99 37.31 0.26 1.05 16 10 C 0.10 2.08 4.48 -3.52 -0.02 2.06 16 11 N -0.60 -14.78 2.49 -165.60 -0.41 -15.19 16 12 C -0.24 -7.14 7.61 -15.06 -0.11 -7.26 16 13 H 0.10 3.41 6.06 -52.49 -0.32 3.09 16 14 C 0.04 1.17 5.49 -17.43 -0.10 1.07 16 15 N -0.91 -29.16 13.97 55.49 0.78 -28.38 16 16 Si 0.88 23.03 24.84 -169.99 -4.22 18.80 16 17 H -0.28 -7.10 7.06 56.52 0.40 -6.70 16 18 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 19 H -0.27 -6.92 6.37 56.52 0.36 -6.56 16 20 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.39 4.39 8.23 -40.82 -0.34 4.05 16 24 H 0.09 1.11 7.66 -51.93 -0.40 0.71 16 25 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 26 H 0.09 1.27 8.14 -51.92 -0.42 0.84 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.73 6.46 -51.93 -0.34 0.39 16 29 H 0.08 1.78 6.71 -51.93 -0.35 1.44 16 30 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 242.92 15.07 3.66 3.66 Total: -1.00 -35.64 242.92 -4.18 -39.82 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.87 Total: -0.19 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 0.58 Total: 12.62 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: -0.01 Total: -55.28 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -0.31 Total: -19.43 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.22 Total: 18.80 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -35.64 -4.18 -39.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130572857.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.270 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds