Wall clock time and date at job start Mon Mar 30 2020 02:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34781 * 119.99797 * 2 1 4 4 O 1.21279 * 120.00001 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99372 * 179.72261 * 3 2 1 6 6 H 1.08991 * 109.68208 * 296.12732 * 5 3 2 7 7 C 1.53300 * 109.68564 * 56.65266 * 5 3 2 8 8 O 1.42957 * 109.22253 * 172.02476 * 7 5 3 9 9 C 1.42965 * 114.16345 * 297.41262 * 8 7 5 10 10 C 1.53297 * 109.22316 * 62.58824 * 9 8 7 11 11 N 1.47155 * 109.67662 * 175.61068 * 5 3 2 12 12 C 1.36939 * 120.98501 * 9.73113 * 11 5 3 13 13 H 1.07999 * 119.99270 * 305.03653 * 12 11 5 14 14 C 1.38800 * 120.00472 * 125.03684 * 12 11 5 15 15 N 1.31620 * 120.00146 * 183.84105 * 14 12 11 16 16 Si 1.86802 * 120.00127 * 3.84416 * 14 12 11 17 17 H 1.48498 * 109.47244 * 84.39834 * 16 14 12 18 18 H 1.48497 * 109.47175 * 204.39932 * 16 14 12 19 19 H 1.48503 * 109.46855 * 324.39465 * 16 14 12 20 20 H 1.08999 * 109.47030 * 300.00448 * 1 2 3 21 21 H 1.09002 * 109.46992 * 60.00181 * 1 2 3 22 22 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 23 23 H 0.96997 * 119.99972 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.50637 * 291.94676 * 7 5 3 25 25 H 1.09003 * 109.51079 * 52.09710 * 7 5 3 26 26 H 1.09008 * 109.51160 * 182.50780 * 9 8 7 27 27 H 1.08998 * 109.51506 * 302.66212 * 9 8 7 28 28 H 1.08992 * 109.68344 * 67.41548 * 10 9 8 29 29 H 1.08999 * 109.68390 * 187.97616 * 10 9 8 30 30 H 0.96999 * 120.00477 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 0.0063 6 1 4.0091 0.7174 0.9303 7 6 4.1673 0.3707 -1.1953 8 8 5.5849 0.5308 -1.2868 9 6 6.0082 1.8767 -1.5175 10 6 5.5812 2.7503 -0.3324 11 7 4.1419 2.5484 -0.1010 12 6 3.2894 3.6143 0.0101 13 1 2.4226 3.6814 -0.6307 14 6 3.5391 4.6083 0.9461 15 7 2.6806 5.5931 1.1052 16 14 5.0938 4.5483 1.9800 17 1 6.2156 5.1597 1.2231 18 1 4.8788 5.3021 3.2413 19 1 5.4227 3.1355 2.2977 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.9500 -0.8400 0.0004 24 1 3.9277 -0.6845 -1.0642 25 1 3.6995 0.7405 -2.1078 26 1 7.0933 1.9049 -1.6182 27 1 5.5471 2.2519 -2.4311 28 1 6.1398 2.4603 0.5575 29 1 5.7728 3.7986 -0.5612 30 1 2.8549 6.2876 1.7596 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130572857.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:46 Heat of formation + Delta-G solvation = -61.257447 kcal Electronic energy + Delta-G solvation = -15340.894566 eV Core-core repulsion = 12750.947650 eV Total energy + Delta-G solvation = -2589.946915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.09251 -39.32612 -36.37324 -35.28434 -33.64513 -32.54561 -29.25887 -27.38224 -25.41679 -24.82782 -22.40244 -21.09404 -19.49812 -17.74151 -17.34668 -17.28642 -16.64415 -16.09833 -15.97515 -15.67042 -15.41717 -15.01122 -14.44343 -13.91235 -13.71376 -13.38179 -13.06702 -12.93547 -12.70156 -12.41197 -12.28860 -11.73435 -11.64799 -11.13483 -10.63979 -10.03458 -9.90255 -8.43192 -7.92661 -5.69964 1.29653 1.36639 1.46698 1.86279 2.32348 2.46667 2.83103 3.16573 3.29216 3.90667 4.15440 4.21069 4.29482 4.40119 4.49277 4.58606 4.67126 4.68796 4.82443 4.91567 5.00095 5.06399 5.60746 6.08468 6.15477 6.43505 6.75323 7.02520 7.56218 7.62933 8.05861 9.12968 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.025233 B = 0.016059 C = 0.010799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.376629 B = 1743.104642 C = 2592.154752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.728 5.728 3 C 0.495 3.505 4 O -0.531 6.531 5 C 0.113 3.887 6 H 0.071 0.929 7 C 0.068 3.932 8 O -0.384 6.384 9 C 0.053 3.947 10 C 0.088 3.912 11 N -0.620 5.620 12 C -0.216 4.216 13 H 0.056 0.944 14 C -0.031 4.031 15 N -0.963 5.963 16 Si 0.948 3.052 17 H -0.264 1.264 18 H -0.313 1.313 19 H -0.258 1.258 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.120 0.880 23 H 0.415 0.585 24 H 0.137 0.863 25 H 0.044 0.956 26 H 0.125 0.875 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 -15.787 -3.664 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.384 5.384 3 C 0.281 3.719 4 O -0.405 6.405 5 C 0.004 3.996 6 H 0.088 0.912 7 C -0.011 4.011 8 O -0.302 6.302 9 C -0.025 4.025 10 C -0.036 4.036 11 N -0.349 5.349 12 C -0.346 4.346 13 H 0.073 0.927 14 C -0.225 4.225 15 N -0.609 5.609 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.241 1.241 19 H -0.183 1.183 20 H 0.054 0.946 21 H 0.059 0.941 22 H 0.138 0.862 23 H 0.252 0.748 24 H 0.155 0.845 25 H 0.063 0.937 26 H 0.143 0.857 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.475 -15.022 -3.574 15.828 hybrid contribution 0.218 0.706 0.792 1.083 sum 3.693 -14.316 -2.782 15.044 Atomic orbital electron populations 1.21550 0.79233 1.03986 1.00532 1.45844 1.07959 1.08035 1.76597 1.20981 0.90817 0.83935 0.76192 1.90958 1.70568 1.31660 1.47314 1.21400 0.90496 0.87982 0.99743 0.91175 1.22973 0.81628 1.01058 0.95403 1.87836 1.21883 1.27418 1.93077 1.23086 1.01131 0.81981 0.96268 1.22205 0.84273 0.99723 0.97422 1.44281 1.03885 1.00742 1.85954 1.18821 1.04260 0.97616 1.13952 0.92705 1.26574 1.00208 0.97816 0.97905 1.69971 1.37700 1.15158 1.38036 0.85823 0.80757 0.78045 0.77785 1.18960 1.24130 1.18259 0.94636 0.94054 0.86161 0.74842 0.84491 0.93718 0.85724 0.93208 0.94397 0.91641 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.23 10.70 127.77 1.37 3.60 16 2 N -0.73 -20.03 5.60 -484.51 -2.71 -22.75 16 3 C 0.50 20.37 7.17 87.66 0.63 21.00 16 4 O -0.53 -29.29 12.31 -3.03 -0.04 -29.33 16 5 C 0.11 4.41 3.50 44.22 0.15 4.57 16 6 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 7 C 0.07 2.01 6.07 72.08 0.44 2.45 16 8 O -0.38 -12.03 10.74 -148.98 -1.60 -13.63 16 9 C 0.05 1.70 6.99 72.08 0.50 2.20 16 10 C 0.09 3.63 4.48 86.35 0.39 4.01 16 11 N -0.62 -30.23 2.49 -677.84 -1.69 -31.92 16 12 C -0.22 -13.12 7.61 84.03 0.64 -12.48 16 13 H 0.06 3.87 6.06 -2.91 -0.02 3.85 16 14 C -0.03 -1.93 5.49 84.86 0.47 -1.46 16 15 N -0.96 -65.17 13.97 21.65 0.30 -64.87 16 16 Si 0.95 48.39 24.84 68.60 1.70 50.10 16 17 H -0.26 -12.43 7.06 99.48 0.70 -11.73 16 18 H -0.31 -16.35 7.11 99.48 0.71 -15.64 16 19 H -0.26 -12.46 6.37 99.48 0.63 -11.82 16 20 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.41 7.45 8.23 -92.71 -0.76 6.69 16 24 H 0.14 2.69 7.66 -2.38 -0.02 2.67 16 25 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.12 3.07 8.14 -2.38 -0.02 3.05 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.54 6.46 -2.39 -0.02 1.53 16 29 H 0.07 2.85 6.71 -2.39 -0.02 2.84 16 30 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 Total: -1.00 -82.91 242.92 0.86 -82.05 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.31 Total: 6.46 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 4.58 Total: 23.89 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -4.10 Total: -119.53 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.64 Total: -42.96 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.70 Total: 50.10 kcal Total: -82.91 0.86 -82.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130572857.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.792 kcal (2) G-P(sol) polarization free energy of solvation -82.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds