Wall clock time and date at job start Mon Mar 30 2020 02:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34638 * 117.00135 * 2 1 4 4 O 1.21513 * 119.99867 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00235 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27525 * 5 3 2 7 7 H 1.09004 * 110.64443 * 36.40691 * 6 5 3 8 8 C 1.55154 * 110.72102 * 159.74728 * 6 5 3 9 9 C 1.54908 * 101.58305 * 153.86256 * 8 6 5 10 10 N 1.47415 * 104.83313 * 322.98781 * 9 8 6 11 11 C 1.36938 * 125.65229 * 204.16310 * 10 9 8 12 12 H 1.08002 * 120.00297 * 179.97438 * 11 10 9 13 13 C 1.38810 * 119.99848 * 359.95978 * 11 10 9 14 14 N 1.31619 * 119.99915 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00245 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47217 * 59.99993 * 15 13 11 17 17 H 1.48495 * 109.47178 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46994 * 300.00217 * 15 13 11 19 19 C 1.47026 * 108.70097 * 24.12967 * 10 9 8 20 20 H 1.09001 * 109.47576 * 300.00199 * 1 2 3 21 21 H 1.08995 * 109.47499 * 60.00396 * 1 2 3 22 22 H 1.08997 * 109.47194 * 180.02562 * 1 2 3 23 23 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 24 24 H 1.09002 * 111.00391 * 271.93938 * 8 6 5 25 25 H 1.08996 * 111.00552 * 35.78314 * 8 6 5 26 26 H 1.09001 * 110.36461 * 204.15069 * 9 8 6 27 27 H 1.08999 * 110.45904 * 81.88275 * 9 8 6 28 28 H 0.97004 * 120.00332 * 180.02562 * 14 13 11 29 29 H 1.09003 * 109.88485 * 239.51672 * 19 10 9 30 30 H 1.09007 * 109.88016 * 118.36053 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 0.0056 7 1 3.5175 3.2876 0.6149 8 6 5.5368 2.4441 0.5063 9 6 6.2112 3.6573 -0.1814 10 7 5.5704 3.7444 -1.5062 11 6 6.1169 4.3229 -2.6206 12 1 5.5645 4.3353 -3.5486 13 6 7.3806 4.8938 -2.5574 14 7 8.0538 4.8786 -1.4265 15 14 8.1263 5.6824 -4.0777 16 1 7.2539 6.7924 -4.5382 17 1 9.4732 6.2144 -3.7493 18 1 8.2449 4.6667 -5.1546 19 6 4.2478 3.1065 -1.4330 20 1 -0.3634 0.5139 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 3.9374 0.4567 -0.0005 24 1 5.5876 2.5321 1.5916 25 1 5.9820 1.5075 0.1708 26 1 7.2822 3.4855 -0.2886 27 1 6.0291 4.5682 0.3888 28 1 8.9367 5.2778 -1.3822 29 1 4.1949 2.2803 -2.1420 30 1 3.4706 3.8381 -1.6545 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160251420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:35 Heat of formation + Delta-G solvation = -75.029186 kcal Electronic energy + Delta-G solvation = -14473.079683 eV Core-core repulsion = 11882.535580 eV Total energy + Delta-G solvation = -2590.544103 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.54360 -39.40444 -37.41590 -35.74843 -33.78436 -31.07892 -29.24174 -28.05618 -26.38196 -22.99532 -22.22244 -21.51275 -19.81947 -18.86737 -18.07570 -17.49558 -16.90669 -16.41756 -15.95105 -14.98556 -14.95770 -14.49761 -14.25914 -13.72732 -13.48595 -13.03564 -12.94413 -12.70778 -12.54313 -12.24577 -12.05438 -11.85315 -11.78348 -11.70247 -11.44051 -10.75103 -10.29431 -8.92152 -7.78737 -5.23895 1.17212 1.48139 1.51143 1.57747 1.70525 2.49703 3.24440 3.32343 3.71926 3.76955 3.99775 4.19406 4.38725 4.39383 4.56737 4.67524 4.73049 4.86579 4.92775 5.02460 5.29837 5.44035 5.44928 5.60611 5.77932 6.29866 6.39355 7.09729 7.28325 7.74838 8.37565 9.22862 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.065146 B = 0.006553 C = 0.006178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.697926 B = 4271.963308 C = 4530.839112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.372 6.372 3 C 0.644 3.356 4 O -0.608 6.608 5 N -0.682 5.682 6 C 0.165 3.835 7 H 0.088 0.912 8 C -0.125 4.125 9 C 0.151 3.849 10 N -0.623 5.623 11 C -0.247 4.247 12 H 0.076 0.924 13 C -0.060 4.060 14 N -0.946 5.946 15 Si 0.982 3.018 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.276 1.276 19 C 0.125 3.875 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.140 0.860 23 H 0.421 0.579 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.085 0.915 27 H -0.006 1.006 28 H 0.250 0.750 29 H 0.029 0.971 30 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 -10.953 4.529 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.397 3.603 4 O -0.500 6.500 5 N -0.342 5.342 6 C 0.060 3.940 7 H 0.106 0.894 8 C -0.164 4.164 9 C 0.026 3.974 10 N -0.350 5.350 11 C -0.375 4.375 12 H 0.093 0.907 13 C -0.253 4.253 14 N -0.595 5.595 15 Si 0.810 3.190 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.001 4.001 20 H 0.081 0.919 21 H 0.076 0.924 22 H 0.158 0.842 23 H 0.258 0.742 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.012 0.988 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -9.722 -10.409 4.467 14.927 hybrid contribution 0.405 0.535 -0.836 1.072 sum -9.316 -9.874 3.631 14.052 Atomic orbital electron populations 1.23515 0.72779 1.05713 1.02525 1.86251 1.25848 1.29629 1.86822 1.18346 0.83825 0.82313 0.75816 1.90980 1.65456 1.36267 1.57295 1.44575 1.02537 1.10343 1.76720 1.21749 0.93621 0.82935 0.95674 0.89404 1.23163 0.91769 1.00191 1.01304 1.21812 0.99407 0.92734 0.83440 1.44707 1.14708 1.67282 1.08314 1.19383 0.99046 1.29796 0.89316 0.90656 1.25600 0.97509 1.01835 1.00359 1.69985 1.13321 1.50566 1.25609 0.85111 0.77129 0.78228 0.78577 1.20784 1.21484 1.20202 1.21718 0.87298 0.95145 0.95980 0.91929 0.92426 0.84225 0.74155 0.88196 0.89562 0.89747 0.98840 0.94028 0.95345 0.97137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.56 113.37 1.20 2.06 16 2 O -0.37 -9.30 10.62 -55.48 -0.59 -9.89 16 3 C 0.64 20.26 8.75 129.79 1.14 21.40 16 4 O -0.61 -23.52 15.86 19.80 0.31 -23.20 16 5 N -0.68 -19.89 5.13 -564.46 -2.90 -22.79 16 6 C 0.16 5.86 3.24 46.18 0.15 6.01 16 7 H 0.09 3.29 7.69 -2.39 -0.02 3.28 16 8 C -0.13 -4.28 6.69 31.98 0.21 -4.07 16 9 C 0.15 7.26 5.89 86.86 0.51 7.77 16 10 N -0.62 -32.77 3.39 -692.00 -2.35 -35.12 16 11 C -0.25 -14.12 10.27 84.03 0.86 -13.25 16 12 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 13 C -0.06 -3.41 5.49 84.86 0.47 -2.94 16 14 N -0.95 -55.48 10.09 21.65 0.22 -55.26 16 15 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 C 0.13 5.57 6.99 86.73 0.61 6.17 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.42 9.69 8.63 -92.71 -0.80 8.89 16 24 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 25 H 0.09 2.67 8.00 -2.39 -0.02 2.65 16 26 H 0.08 4.55 5.87 -2.39 -0.01 4.53 16 27 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 28 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 30 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 Total: -1.00 -69.43 257.04 2.21 -67.22 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.34 Total: 8.23 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 5.14 Total: 23.15 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -5.03 Total: -113.17 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.27 Total: -33.09 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.43 2.21 -67.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160251420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.811 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds